Detailed information on CNT30222738


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Hordeum vulgareOryza sativa37.0418.4290100forward
CNT30143198Hordeum vulgareLolium perenne37.0440.1690100forward
CNT30716030Hordeum vulgareMalus domestica golden47.4150.286.72128forward
CNT30683328Hordeum vulgareTriticum urartu35.562491.6796forward
CNT30721681Hordeum vulgareTriticum spelta22.9619.9491.9462forward
CNT30361796Hordeum vulgareSorghum bicolor58.5212.5294.94158forward
CNT30595906Hordeum vulgareOryza meridionalis37.0446.9590100forward
CNT30327267Hordeum vulgareAsparagus officinalis37.0429.9487100forward

Expression of CNT30222738

Peptides detected in this lncRNA

>peptide 1 (89 aa)
EDAVDVVAVVELVVEALRHHDGPRGVAVLHDDEEVQVPDRRDDDVQLVLEQRRHRPRPAKSLGSLLPDPRCEQRRRRKACVASGSAGGVM

>peptide 2 (69 aa)
MTVLVGSPSCTMMRKSRFRIVGMTMSSSSLSSGAIVPGRPKASDLSSLIPDASRGGGGRRVWLLALQGV*

Sequence

>CNT30222738
GAGGATGCGGTTGATGTCGTTGCGGTTGTAGAGCTCGTAGTCGAAGCCCTCAGGCACCATGACGGTCCTCGTGGGGTCGCCGTCCTGCACGATGATGAGG
AAGTCCAGGTTCCGGATCGTCGGGATGACGATGTCCAGCTCGTCCTTGAGCAGCGGCGCCATCGTCCCCGGCCGGCCAAAAGCCTCGGATCTCTCCTCCC
TGATCCCAGATGCGAGCAGAGGAGGAGGAGGAAGGCGTGTGTGGCTTCTGGCTCTGCAGGGGGTGTGATG