Detailed information on CNT30361796


BLAST search results

BLAST vs Swiss-Prot:
sp|P85413|RGP1_PHODC, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375225Sorghum bicolorArabidopsis thaliana7.4525.1386.1794forward
CNT30222738Sorghum bicolorHordeum vulgare12.5258.5294.94158forward
CNT30716030Sorghum bicolorMalus domestica golden10.1450.290.62128forward
CNT30595906Sorghum bicolorOryza meridionalis10.1460.0995.31128forward

Expression of CNT30361796

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGSHKQGPLAKMKRTLVTDKALTTSTRWQPSSNPRA*

>peptide 2 (50 aa)
MASWQHPLFPVGTKALELATEHSQLLRRIQIRNARLRPSSYGSTRLTARG*

>peptide 3 (52 aa)
MFLTDHSAASSGDQNSEFDWTAGYYFQNHDAASSIIRIMNVVMWILHGGYKN*

>peptide 4 (92 aa)
MVLVGSPSCTMMRKSRLRIVGITMSSSSLSSGVEGTDAPGTVTVPAIAAGRGGGGGARASGSRSLCPLSALCYRTGPGGGWGGDLGSRGGWEA

Sequence

>CNT30361796
AATAGCAGGTGTGCAATGATGTAGCTCTATGTCAGATCGTGGCACCTGCTGCCTAGATGGTAAAATTCATAAGGTAAAATTCATAATTTGATCACATAGC
TGGATATTACTGCTAATGTTTCTGACAGATCACAGTGCTGCTAGCTCAGGTGATCAAAATTCAGAATTTGATTGGACTGCTGGATACTACTTCCAAAATC
ATGATGCTGCTAGTTCCATTATCAGAATTATGAATGTAGTGATGTGGATCTTACATGGAGGATATAAAAACTGAACTAATGTGAATTACAAAAGTTGTCA
CTGCTCGGATCTGATCTGAAGCAACCATCTAGTCCAGATCCAATGACATTAGAGCATTCTGGCACGTTTTGGTTATTAAGTAAATGACAAACTGAATGTG
CCAAGGTTGTGATCCGCGATGGGATCACATAAACAAGGACCCCTGGCCAAGATGAAAAGGACCCTTGTAACCGACAAGGCACTAACTACCAGTACGAGGT
GGCAACCATCTAGCAACCCCCGAGCGTAGGTATGGCTAGCTGGCAGCATCCCCTGTTTCCTGTCGGAACGAAGGCACTAGAGCTAGCTACTGAGCACAGC
CAGCTGCTACGACGGATCCAGATCCGTAATGCTAGACTACGCCCAAGCTCCTACGGATCAACGCGTTTGACCGCGCGCGGCTAGATCCAGATCTGATCCG
GGCGGATCTGGGCCAATTCGATCGAATTTGACCCAGATCCGGCGTCAAGACCTTCGGATCCACGCGGAATTGAACGAACGAGACGAAACGAGAGAGAAGA
AGGAGGCGGGGGCTTACGAAGCAGTCGTCGTCGATGGTGTAGATGTACTTCTTCTTGGAGACCATGTAGCCGAAGCAGCGGCACGCCGAGTCCTTGAAGG
AGATGCAGGAGGCCTTGGGGCCGAGGATGCGGTTGATGTCGTTGCGGTTGTAGAGCTCGTAGTCGAAGCCCTCGGGCACCTTGATGGTCTTGGTGGGGTC
GCCGTCCTGCACGATGATGAGGAAGTCGAGGTTGCGGATCGTCGGGATCACGATGTCCAGCTCGTCCTTGAGCAGCGGCGTCGAGGGGACCGACGCCCCC
GGGACCGTCACCGTGCCCGCCATTGCCGCAGGTCGTGGTGGTGGTGGTGGTGCTCGCGCCTCCGGATCTCGATCTCTCTGCCCCCTCTCCGCTCTCTGCT
ACCGGACCGGACCGGGAGGTGGGTGGGGAGGAGATCTTGGGAGCAGAGGAGGTTGGGAGGCG