« Back to Malus domestica golden search


Detailed information on CNT30716030


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SC19|RGP1_SOLTU, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Malus domestica goldenOryza sativa37.6517.6889.5896forward
CNT30222738Malus domestica goldenHordeum vulgare50.247.4186.72128forward
CNT30143198Malus domestica goldenLolium perenne34.1234.9488.5187forward
CNT30683328Malus domestica goldenTriticum urartu34.1221.7587.3687forward
CNT30361796Malus domestica goldenSorghum bicolor50.210.1490.62128forward
CNT30595906Malus domestica goldenOryza meridionalis37.6545.0789.5896forward
CNT30327267Malus domestica goldenAsparagus officinalis76.0858.0884.02194forward

Expression of CNT30716030

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVFVGSPSWTMMRKSRFLMVGITMSSSSVKRGVAEAIGGERGKVRER

>peptide 2 (71 aa)
KASAGRVFERNAGRPRTQNPVNVVAVVELVVEAVGDLDGLRRITVLDDDEEVEVSDGRDHNVELIRQKGCR*

Sequence

>CNT30716030
CCAAAGCATCGGCAGGCAGAGTCTTTGAACGAAATGCAGGACGACCTCGGACCCAGAATCCTGTTAATGTCGTTGCGGTTGTAGAGCTCGTAGTCGAAGC
CGTCGGGGACCTTGATGGTCTTCGTCGGATCACCGTCCTGGACGATGATGAGGAAGTCGAGGTTTCTGATGGTCGGGATCACAATGTCGAGCTCATCCGT
CAAAAGGGGTGTCGCTGAAGCCATTGGAGGTGAAAGGGGCAAAGTTCGAGAGAGA