Detailed information on CNT30683328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Triticum urartuOryza sativa62.7546.2289.64251forward
CNT30222738Triticum urartuHordeum vulgare2435.5691.6796forward
CNT30143198Triticum urartuLolium perenne39.563.4596.84158forward
CNT30231412Triticum urartuAnanas comosus50.2556.386.57201forward
CNT30716030Triticum urartuMalus domestica golden21.7534.1287.3687forward
CNT30361937Triticum urartuSorghum bicolor63.520.5591.73254forward
CNT30595906Triticum urartuOryza meridionalis29.2554.9390.6117forward

Expression of CNT30683328

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPTIRAQSPSLPLLPGRDLDLEPWISLFLEVVVGVGVERGVG

>peptide 2 (87 aa)
MTLLGSPSCTMMRWYGWKKGRHISRKSRLRMVGITMSSSSLSSGVDGTDDPGTVTVPAIAAWPGSRSRALDLAVPGGGGRGGSRERCG

>peptide 3 (33 aa)
DAPSSPHVIVATNRLAITHEALGPRMRLMSLRL*

Sequence

>CNT30683328
TTGACGCACCATCCAGCCCACATGTCATCGTAGCGACCAATAGGCTGGCCATCACCCATGAGGCCTTGGGGCCGAGAATGCGGTTGATGTCGTTGCGGTT
GTAGAGCTCGTAGTCGAAGCCCTCAGGAACCTTGATGACCTTGCTGGGGTCGCCGTCCTGCACGATGATGAGGTGGTACGGCTGGAAGAAGGGGCGCCAC
ATCTCGAGGAAGTCGAGATTGCGGATGGTCGGGATCACGATGTCCAGCTCGTCCTTGAGCAGCGGCGTTGATGGCACCGACGATCCGGGCACAGTCACCG
TCCCTGCCATTGCTGCCTGGCCGGGATCTCGATCTCGAGCCCTGGATCTCGCTGTTCCTGGAGGTGGTGGTAGGGGTGGGAGTAGAGAGAGGTGTGGGTT