Detailed information on CNT30721681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Triticum speltaOryza sativa45.9826.3490.21143forward
CNT30222738Triticum speltaHordeum vulgare19.9422.9691.9462forward
CNT30143198Triticum speltaLolium perenne16.0820.089850forward
CNT30231412Triticum speltaAnanas comosus29.5825.7785.8792forward
CNT30684015Triticum speltaTriticum urartu92.9379.498.96289forward
CNT30361937Triticum speltaSorghum bicolor46.9511.8190.41146forward
CNT30596003Triticum speltaOryza meridionalis29.5828.5790.2292forward

Expression of CNT30721681

SRR9114152: 454.64 RPKM

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MHEVVRLEEGAPHLEEVEIADGRDHDVQLVLEQRRRWHRRSGHSHRPCHCCLAGISISSPGSRCSWRWW*

>peptide 2 (82 aa)
MRWYGWKKGRHISRKSRLRMVGITMSSSSLSSGVDGTDDPGTVTVPAIAAWPGSRSRALDLAVPGGGGRGGSSERCGFGLGK*

>peptide 3 (49 aa)
MAPTIRAQSPSLPLLPGRDLDLEPWISLFLEVVVGVGVVRGVGLGLENEG

Sequence

>CNT30721681
CTTCTTCGAGACCATGTAGCCGAAGCAGCGGCACGCGGAGTCCTTGAAGGAGATGCATGAGGTGGTACGGCTGGAAGAAGGGGCGCCACATCTCGAGGAA
GTCGAGATTGCGGATGGTCGGGATCACGATGTCCAGCTCGTCCTTGAGCAGCGGCGTCGATGGCACCGACGATCCGGGCACAGTCACCGTCCCTGCCATT
GCTGCCTGGCCGGGATCTCGATCTCGAGCCCTGGATCTCGCTGTTCCTGGAGGTGGTGGTAGGGGTGGGAGTAGTGAGAGGTGTGGGTTTGGGCTTGGAA
AATGAGGGGGT