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Detailed information on CNT3022163


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 2e-148

BLAST vs NONCODE:
NONMEST001519, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534291Populus trichocarpaEucalyptus grandis24.8833.1285.31211forward
CNT30377201Populus trichocarpaArabidopsis thaliana49.1772.984.17417forward
CNT30728062Populus trichocarpaCorchorus capsularis54.9553.586.91466forward
CNT30381383Populus trichocarpaManihot esculenta40.2119.4191.5341forward
CNT30708222Populus trichocarpaGlycine max35.1473.9584.56298forward
CNT30562824Populus trichocarpaActinidia chinensis41.2762.9586.29350forward
CNT30511260Populus trichocarpaSolanum lycopersicum20.7543.6787.5176forward
CNT30322043Populus trichocarpaAsparagus officinalis67.4568.3480.94572forward
CNT3049477Populus trichocarpaCucumis sativus13.6840.8590.52116forward

Expression of CNT3022163

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKKCKRGKGMRFTASFLRSELSCPGNLRQQVTPLIVAEIR*

>peptide 2 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRLNISWMEVEFPMKVDAIASPIGGISHTLDLTLFGIHSTK*

Sequence

>CNT3022163
GGCTTAATATTTAACTTGTAGAACTGGGAAAGTAAGAATATAGGCAATTTTCCAACCCTACTTACTACTCAAACTGCTCAGACAGTGCAAATCACCACGC
GGAACTTAAAGCGGTAAAAATGTATGAAAAATAGCAGCAGCAGCAGAAGATAGACCTTGCACAACTCATTACATCTAGGCAGCCTCTTCCTCCTCCTCAT
CCTCGTACTCAAGTTCTTCATCAACGGTTGCATCCTGGTATTGCTGATATTCAGACACGAGATCATTCATGTTGCTTTCAGCCTCGGTGAACTCCATCTC
ATCCATGCCTTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAATTGCTCACTCACACGCCTGAACATCTCCTGGATGGAGGTT
GAGTTTCCAATGAAGGTGGATGCCATTGCAAGCCCTATTGGAGGAATATCACACACACTGGACTTGACATTGTTTGGAATCCACTCCACAAAGTAGGAGG
AATTCTTGTTTTGGACATTGATCATCTGTTCATCAACTTCTTTAGTGCTCATCTTACCCCTGAACATGGCAGAGGCAGTCAGATAGCGACCGTGGCGCGG
GTCTGCAGCGCACATCATGTTCTTGGAATCCCACATCTGCTGGGTGAGTTCTGGGACAGTTAGTGCCCGGTACTGCTGAGAACCTCGTGAAGTCAGAGGA
GCAAATCCAACCATGAAGAAGTGCAAACGGGGGAAGGGGATGAGGTTCACTGCAAGCTTCCTAAGATCAGAGTTAAGCTGCCCAGGAAACCTGAGGCAGC
AGGTGACACCACTCATTGTTGCAGAAATCAGATGATTGAGGTCACCAA