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Detailed information on CNT30562824


BLAST search results

BLAST vs Swiss-Prot:
sp|P45960|TBB4_ORYSJ, E-value = 6e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675279Actinidia chinensisSetaria viridis61.5146.8585.96342forward
CNT30522713Actinidia chinensisSetaria italica64.7597.0486.11360forward
CNT30728063Actinidia chinensisCorchorus capsularis63.6740.7886.72354forward
CNT30381383Actinidia chinensisManihot esculenta97.1230.7383.89540forward
CNT30402401Actinidia chinensisBeta vulgaris84.7139.6582.38471forward
CNT30196370Actinidia chinensisPisum sativum67.9939.6687.57378forward
CNT30710178Actinidia chinensisGlycine max51.4467.4583.92286forward
CNT30168132Actinidia chinensisPistacia vera28.0637.9685.26156forward
CNT30542792Actinidia chinensisBrassica napus73.293.7883.78407forward
CNT305432Actinidia chinensisZea mays31.8348.2389.83177forward
CNT30627268Actinidia chinensisDaucus carota64.3928.9283.8358forward
CNT30681999Actinidia chinensisTriticum urartu56.1298.1183.97312forward
CNT30368415Actinidia chinensisSorghum bicolor93.1750.3481.66518forward
CNT30424412Actinidia chinensisPapaver somniferum61.6930.1982.8343forward
CNT3057379Actinidia chinensisAmborella trichopoda19.4238.7189.81108forward
CNT3022163Actinidia chinensisPopulus trichocarpa62.9541.2786.29350forward
CNT30149545Actinidia chinensisBrachypodium distachyon14.3923.818580forward
CNT3049477Actinidia chinensisCucumis sativus26.0851.0683.45145forward

Expression of CNT30562824

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVEFPMKVDAMESPRGGMSQTLDFTLLGIHSTK*

>peptide 2 (44 aa)
MADAVRARYCWDPREVRGAKPTMKKWRRGKGIRFTASLRRSELS*

>peptide 3 (62 aa)
SYSPSSSAVASWYCWYSDTRSFMLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNIS*

>peptide 4 (66 aa)
LVFTFLISSSILVLLVLGHKIIHVALGFGELHFVHSFPSIPVQESFPPEHSSELLTHTSEHFLNGS*

Sequence

>CNT30562824
CTCGTATTCACCTTCCTCATCAGCAGTAGCATCCTGGTATTGCTGGTACTCGGACACAAGATCATTCATGTTGCTCTCGGCTTCGGTGAACTCCATTTCG
TCCATTCCTTCCCCAGTATACCAGTGCAAGAAAGCTTTCCTCCTGAACATAGCAGTGAACTGCTCACTCACACGTCTGAACATTTCCTGAATGGAAGTTG
AATTCCCAATGAAGGTGGACGCCATGGAAAGTCCCCGTGGAGGAATGTCACAAACACTGGATTTCACATTGTTAGGGATCCACTCCACAAAGTAAGAAGA
GTTTTTGTTCTGAACATTGATCATCTGCTCATCCACCTCTTTGGTGCTCATTTTGCCCCTGAACATGGCTGATGCAGTGAGGGCGCGGTATTGCTGGGAC
CCACGTGAGGTCAGAGGAGCAAAACCCACCATGAAGAAGTGGAGACGGGGGAAGGGGATCAGGTTTACAGCAAGCTTGCGGAGGTCAGAGTTGAGTTGAC
CAGGGAAGCGGAGACAGCAAGTGACCCCACTCATGGTTGCAGAGATCAAGTGGTTC