« Back to Asparagus officinalis search


Detailed information on CNT30322043


BLAST search results

BLAST vs Swiss-Prot:
sp|P37392|TBB1_LUPAL, E-value = 4e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Asparagus officinalisSetaria viridis58.358.7285.04488forward
CNT30522155Asparagus officinalisSetaria italica40.6238.6886.76340forward
CNT30534291Asparagus officinalisEucalyptus grandis24.1331.7184.16202forward
CNT30377201Asparagus officinalisArabidopsis thaliana50.6674.1384.2424forward
CNT30728062Asparagus officinalisCorchorus capsularis55.6853.581.55466forward
CNT30381383Asparagus officinalisManihot esculenta38.9518.5580.98326forward
CNT30402401Asparagus officinalisBeta vulgaris35.3624.9283.11296forward
CNT30629386Asparagus officinalisVigna unguiculata11.3536.8286.3295forward
CNT30196370Asparagus officinalisPisum sativum54.7248.0680.79458forward
CNT30486254Asparagus officinalisOlea europaea20.7945.4384.48174forward
CNT30708222Asparagus officinalisGlycine max34.8972.4682.19292forward
CNT3092760Asparagus officinalisSolanum tuberosum23.1828.0384.54194forward
CNT30291318Asparagus officinalisTriticum aestivum29.6374.4788.71248forward
CNT30223001Asparagus officinalisHordeum vulgare17.853.691.28149forward
CNT30390564Asparagus officinalisTriticum turgidum21.0357.8985.8176forward
CNT30586804Asparagus officinalisMusa acuminata24.7326.8186.47207forward
CNT30542792Asparagus officinalisBrassica napus31.5460.8385.61264forward
CNT30511260Asparagus officinalisSolanum lycopersicum23.8949.6384.5200forward
CNT30553024Asparagus officinalisOryza glaberrima43.8525.782.56367forward
CNT30252641Asparagus officinalisAvena sativa61.1762.9882.03512forward
CNT30261872Asparagus officinalisBrassica rapa75.1571.0784.74629forward
CNT30614070Asparagus officinalisArabis alpina51.3731.1184.19430forward
CNT3015387Asparagus officinalisZea mays40.3820.8983.14338forward
CNT3041960Asparagus officinalisChlamydomonas reinhardtii16.1339.5981.48135forward
CNT30608822Asparagus officinalisGossypium raimondii37.1646.4281.67311forward
CNT30203517Asparagus officinalisHelianthus annuus75.8756.4985.2635forward
CNT30627268Asparagus officinalisDaucus carota55.0837.2482.21461forward
CNT30681848Asparagus officinalisTriticum urartu65.8362.2685.3551forward
CNT30341625Asparagus officinalisEragrostis tef70.1360.2181.6587forward
CNT30368415Asparagus officinalisSorghum bicolor49.5840.3382.17415forward
CNT30595966Asparagus officinalisOryza meridionalis26.2835.8986.36220forward
CNT30369350Asparagus officinalisOryza glumipatula42.0550.6584.94352forward
CNT30433323Asparagus officinalisPapaver somniferum58.664579.84491forward
CNT30569889Asparagus officinalisVitis vinifera18.1631.9386.18152forward
CNT3033661Asparagus officinalisTheobroma cacao23.7895.6782.91199forward
CNT3054138Asparagus officinalisAmborella trichopoda36.6860.5581.11307forward
CNT3022163Asparagus officinalisPopulus trichocarpa68.3467.4580.94572forward
CNT30119164Asparagus officinalisCitrus clementina37.1666.7483.92311forward
CNT3036150Asparagus officinalisCucumis melo14.2235.3183.19119forward
CNT30330123Asparagus officinalisDioscorea rotundata41.4634.0982.71347forward
CNT3099978Asparagus officinalisOryza rufipogon36.5637.7887.58306forward
CNT30575061Asparagus officinalisOryza barthii46.7143.0184.65391forward
CNT30333708Asparagus officinalisCynara cardunculus43.6145.0683.84365forward
CNT3049477Asparagus officinalisCucumis sativus15.5345.7790130forward

Expression of CNT30322043

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KEKKQPHIAPQRIQQKAEHVQHITSNIQNIG*

>peptide 2 (79 aa)
MAGVGGAHHVLGVPHLLGELGDSERSVLLGPTGREGCKADHEEVESREGDEIDGKLAEVRVELTRESEAACNSAHGSRN*

>peptide 3 (88 aa)
MLIICSSTSLVLILPRNIAEAVRYRPWRGSAAHIMFLASHICWVSSGTVRDRYCWDPRDVRGAKPTMKKWSRGKGMRLTASLRRSELS*

>peptide 4 (68 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNMAVNCSLTLLNISCIDVELPINVDAIFSPVGGMSHTVDFTL*

>peptide 5 (69 aa)
QRKKATAYCAPENSAKSRACTAHNIKHTEHRIRTHSSWQLRTMSKANQVSSYSPSSSSSYSPSSSAVAS*

Sequence

>CNT30322043
CAAAGAAAAAAAGCAACCGCATATTGCGCCCCAGAGAATTCAGCAAAAAGCAGAGCATGTACAGCACATAACATCAAACATACAGAACATAGGATAAGAA
CACATAGTTCATGGCAACTTAGAACAATGAGCAAAGCAAATCAAGTCTCCTCATACTCACCCTCCTCTTCATCCTCATACTCCCCATCCTCATCCGCCGT
CGCATCCTGATACTGCTGATACTCTGACACCAAATCATTCATGTTACTCTCTGCCTCCGTAAACTCCATCTCATCCATCCCCTCCCCCGTATACCAATGC
AAGAAAGCCTTCCTCCTAAACATGGCAGTAAACTGCTCGCTCACCCTCCTAAACATCTCCTGTATCGACGTTGAGTTACCAATAAACGTCGACGCCATCT
TCAGCCCAGTCGGTGGGATGTCACATACCGTGGACTTCACGTTGTGAGGAATCCACTCCACAAAGTAGGACGAGTTCTTGTTTTGGATGTTGATCATCTG
CTCATCGACCTCTTTGGTGCTCATCTTGCCACGAAACATAGCGGAGGCGGTGAGGTATCGGCCATGGCGGGGGTCGGCGGCGCACATCATGTTCTTGGCG
TCCCACATTTGTTGGGTGAGCTCGGGGACAGTGAGAGATCGGTACTGCTGGGACCCACGGGACGTGAGGGGTGCAAAGCCGACCATGAAGAAGTGGAGTC
GAGGGAAGGGGATGAGATTGACGGCAAGCTTGCGGAGGTCAGAGTTGAGCTGACCAGGGAATCGGAGGCAGCATGTAACTCCGCTCATGGTAGCCGAAAT
TAAGTGATTGAGATCGCCAACTGAATTCAGTAAAACA