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Detailed information on CNT30511260


BLAST search results

BLAST vs Swiss-Prot:
sp|P25862|TBB1_AVESA, E-value = 4e-57

BLAST vs NONCODE:
NONBNAT007651, E-value = 5e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Solanum lycopersicumOryza sativa40.6928.6281.71164forward
CNT30678154Solanum lycopersicumSetaria viridis75.9350.0883.66306forward
CNT30522155Solanum lycopersicumSetaria italica38.4617.6384.52155forward
CNT30641074Solanum lycopersicumNymphaea colorata31.2734.3384.13126forward
CNT30534291Solanum lycopersicumEucalyptus grandis50.3731.8787.19203forward
CNT30377201Solanum lycopersicumArabidopsis thaliana40.6928.6788.41164forward
CNT30727961Solanum lycopersicumCorchorus capsularis47.3916.0687.43191forward
CNT30381383Solanum lycopersicumManihot esculenta45.9110.5386.49185forward
CNT30402401Solanum lycopersicumBeta vulgaris26.559.0190.65107forward
CNT30629386Solanum lycopersicumVigna unguiculata18.3628.6886.4974forward
CNT30196370Solanum lycopersicumPisum sativum44.4218.7887.71179forward
CNT30486254Solanum lycopersicumOlea europaea32.5134.287.02131forward
CNT30710178Solanum lycopersicumGlycine max40.6938.6885.37164forward
CNT3092760Solanum lycopersicumSolanum tuberosum50.3729.3485.71203forward
CNT30223001Solanum lycopersicumHordeum vulgare25.0636.3391.09101forward
CNT30390564Solanum lycopersicumTriticum turgidum44.4258.8890.5179forward
CNT30562825Solanum lycopersicumActinidia chinensis79.958.3383.23322forward
CNT30586804Solanum lycopersicumMusa acuminata72.2137.6981.44291forward
CNT30542792Solanum lycopersicumBrassica napus22.3320.7486.6790forward
CNT30553024Solanum lycopersicumOryza glaberrima40.6911.4881.71164forward
CNT30442409Solanum lycopersicumAegilops tauschii32.2619.483.85130forward
CNT30253208Solanum lycopersicumAvena sativa45.6615.3185.87184forward
CNT30261872Solanum lycopersicumBrassica rapa44.1720.1185.39178forward
CNT30614070Solanum lycopersicumArabis alpina38.4611.2289.03155forward
CNT305432Solanum lycopersicumZea mays42.4346.5990.64171forward
CNT3041960Solanum lycopersicumChlamydomonas reinhardtii38.4645.4583.87155forward
CNT30203517Solanum lycopersicumHelianthus annuus51.6118.5187.5208forward
CNT30627268Solanum lycopersicumDaucus carota45.9114.9488.65185forward
CNT30681848Solanum lycopersicumTriticum urartu28.0412.7791.15113forward
CNT30722476Solanum lycopersicumTriticum spelta31.0218.6884125forward
CNT30341625Solanum lycopersicumEragrostis tef35.4814.6788.11143forward
CNT30363168Solanum lycopersicumSorghum bicolor44.1718.0589.89178forward
CNT30595966Solanum lycopersicumOryza meridionalis31.2720.5584.92126forward
CNT30369370Solanum lycopersicumOryza glumipatula63.0338.3184.25254forward
CNT30433292Solanum lycopersicumPapaver somniferum36.9714.2288.59149forward
CNT30570854Solanum lycopersicumVitis vinifera32.5165.1786.26131forward
CNT3033661Solanum lycopersicumTheobroma cacao32.2662.583.08130forward
CNT3022163Solanum lycopersicumPopulus trichocarpa43.6720.7587.5176forward
CNT30322043Solanum lycopersicumAsparagus officinalis49.6323.8984.5200forward
CNT30119164Solanum lycopersicumCitrus clementina34.7430.0482.86140forward
CNT3036150Solanum lycopersicumCucumis melo33.2539.7688.06134forward
CNT30332119Solanum lycopersicumDioscorea rotundata37.2223.6285.33150forward
CNT30150001Solanum lycopersicumBrachypodium distachyon27.7935.4483.93112forward
CNT30575530Solanum lycopersicumOryza barthii40.6918.1681.71164forward
CNT30117026Solanum lycopersicumOryza nivara24.5714.7387.8899forward
CNT30602702Solanum lycopersicumGaldieria sulphuraria29.5313.2184.03119forward
CNT3049477Solanum lycopersicumCucumis sativus32.5146.1386.26131forward

Expression of CNT30511260

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTRLNIS*

>peptide 2 (54 aa)
CGLASSITKVQITFQFTPLELHLHPHSTPPLHQQWHLGTADTPTQDRSCCFQPR*

Sequence

>CNT30511260
GTTGTGGTTTGGCATCATCCATAACAAAAGTACAAATTACATTTCAATTTACTCCTCTTGAGCTTCATCTTCATCCTCATAGTACTCCCCCTCTTCATCA
GCAGTGGCATCTTGGTACTGCTGATACTCCGACACAAGATCGTTCATGTTGCTTTCAGCCTCGGTAAACTCCATCTCGTCCATTCCTTCACCAGTGTACC
AATGCAAGAAAGCCTTTCTCCTGAACATAGCAGTGAACTGTTCGCTCACGCGCCTAAACATCTCCTGAATTGATGATGAGTTCTTGTTCTGCACGTTGAG
CATTTGCTCATCGACCTCTTTCGTGCTCATTTTGCCCCTGAACATAGCTGAGGCAGTCAAGTATCTGCCGTGGCGAGGGTCAGCTGCACACATCATGTTC
TTG