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Detailed information on CNT30728062


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 1e-122

BLAST vs NONCODE:
NONPOPT000063, E-value = 1e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Corchorus capsularisSetaria viridis46.0448.2683.54401forward
CNT30402401Corchorus capsularisBeta vulgaris34.3325.1786.29299forward
CNT30708222Corchorus capsularisGlycine max34.173.784.18297forward
CNT30291318Corchorus capsularisTriticum aestivum29.1676.2883.46254forward
CNT30223001Corchorus capsularisHordeum vulgare14.2444.690.32124forward
CNT30442409Corchorus capsularisAegilops tauschii33.9844.1883.45296forward
CNT30252641Corchorus capsularisAvena sativa52.4756.2183.81457forward
CNT305432Corchorus capsularisZea mays20.5548.7790.5179forward
CNT30608822Corchorus capsularisGossypium raimondii38.9250.683.48339forward
CNT30209019Corchorus capsularisHelianthus annuus52.4754.7382.06457forward
CNT30681848Corchorus capsularisTriticum urartu46.7345.9984.52407forward
CNT30722476Corchorus capsularisTriticum spelta33.9844.2583.11296forward
CNT30341625Corchorus capsularisEragrostis tef50.5245.1382.95440forward
CNT30369350Corchorus capsularisOryza glumipatula33.9842.5985.81296forward
CNT30433323Corchorus capsularisPapaver somniferum52.5841.9882.1458forward
CNT30570854Corchorus capsularisVitis vinifera17.6876.6289.61154forward
CNT30706519Corchorus capsularisPrunus avium40.5342.5886.12353forward
CNT3033661Corchorus capsularisTheobroma cacao22.6294.7195.43197forward
CNT3054138Corchorus capsularisAmborella trichopoda37.3164.181.54325forward
CNT3022163Corchorus capsularisPopulus trichocarpa53.554.9586.91466forward
CNT30322043Corchorus capsularisAsparagus officinalis53.555.6881.55466forward
CNT30330123Corchorus capsularisDioscorea rotundata40.1834.3885.14350forward
CNT3099978Corchorus capsularisOryza rufipogon32.2634.6983.27281forward
CNT30575061Corchorus capsularisOryza barthii33.9832.5685.81296forward
CNT30333708Corchorus capsularisCynara cardunculus34.3336.9183.28299forward

Expression of CNT30728062

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MEVELPMKVDAIDRPRGGISQTLDLTLFGIHSTKYEEFLF*

>peptide 2 (69 aa)
DQYRCRFDYYYQENKQIKAKWRDIDKTTKSNRAAGLEFKHRERVIQTTFHICKLLKLAENCHFPTLKAV*

Sequence

>CNT30728062
AGACCAATATAGGTGCAGATTTGACTACTACTACCAAGAAAACAAACAGATAAAAGCAAAATGGAGAGATATAGACAAGACTACTAAATCGAATAGAGCA
GCAGGGCTAGAATTCAAACATAGAGAGAGAGTAATACAAACAACTTTTCACATATGTAAACTACTCAAACTAGCAGAAAATTGCCACTTTCCAACTCTCA
AAGCAGTATAACGAGGCATTACCACATCCCACAATAGAGTAGCATAGGGCCTTTAGTATTTAGATCTCTCACATCTCATGCTCAATAGTTCCTTCCTCAT
CCTCCTCATACTCAACATCATCCTCGGCTGTTGCATCCTGCCTCAGTGAACTCCATTTCATCCATTCCTTCCCCAGTGTACCAGTGCAAGAAAGCCTTCC
TCCTAAACATGGCAGTGAACTGCTCACTTACTCTCCTGAACATCTCCTGAATGGAGGTCGAGTTACCGATGAAAGTTGATGCCATAGACAGGCCACGAGG
AGGAATATCACAAACACTGGACTTGACATTGTTTGGAATCCACTCAACAAAGTATGAAGAGTTCTTGTTTTGAACATTAATCATTTGCTCATCAACCTCT
TTGGTGCTCATCTTGCCCCTGAACATGGCAGAGGCTGTGAGGTAACGACCATGTCGAGGGTCTGCAGCACACATCATGTTCTTAGAATCCCACATCTGCT
GTGTGAGTTCGGGCACAGTTAGAGCACGATACTGCTGAGATCCACGTGAGGTGAGAGGAGCAAATCCAACCATAAAGAAGTGCAGACGAGGGAAAGGAAT
GAGGTCAGAATTGAGTTGGCCAGGGAACCTAAGGCAGCATGTGACACCACTCATGGTTGCAGATATCAGAT