Detailed information on CNT30708222


BLAST search results

BLAST vs Swiss-Prot:
sp|P12460|TBB2_SOYBN, E-value = 5e-66

BLAST vs NONCODE:
NONGMAT000204, E-value = 6e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Glycine maxOryza sativa43.9230.8981.36177forward
CNT30675224Glycine maxSetaria viridis75.9336.8283.66306forward
CNT30522155Glycine maxSetaria italica50.8723.3284.39205forward
CNT30641074Glycine maxNymphaea colorata40.244.1485.8162forward
CNT30534291Glycine maxEucalyptus grandis22.0813.9786.5289forward
CNT30728062Glycine maxCorchorus capsularis73.734.184.18297forward
CNT3071804Glycine maxQuercus suber20.8413.590.4884forward
CNT30629386Glycine maxVigna unguiculata30.5247.6782.11123forward
CNT30486254Glycine maxOlea europaea48.1450.6585.57194forward
CNT30291318Glycine maxTriticum aestivum40.248.6585.8162forward
CNT30223001Glycine maxHordeum vulgare34.9950.7284.4141forward
CNT30586804Glycine maxMusa acuminata32.2616.8486.15130forward
CNT30542792Glycine maxBrassica napus62.5358.0683.33252forward
CNT30553024Glycine maxOryza glaberrima46.413.183.42187forward
CNT30442409Glycine maxAegilops tauschii39.9524.0387.58161forward
CNT30252641Glycine maxAvena sativa71.9635.6781.72290forward
CNT30614070Glycine maxArabis alpina72.721.284.98293forward
CNT3015387Glycine maxZea mays68.7317.1283.03277forward
CNT3041960Glycine maxChlamydomonas reinhardtii19.1122.5889.6177forward
CNT30608822Glycine maxGossypium raimondii72.9543.8880.95294forward
CNT30681848Glycine maxTriticum urartu73.733.5683.5297forward
CNT30722476Glycine maxTriticum spelta39.9524.0785.09161forward
CNT30341625Glycine maxEragrostis tef73.730.4682.83297forward
CNT30595966Glycine maxOryza meridionalis46.430.5182.35187forward
CNT30369350Glycine maxOryza glumipatula46.927.1986.77189forward
CNT30570854Glycine maxVitis vinifera3468.1689.78137forward
CNT30706519Glycine maxPrunus avium46.922.886.24189forward
CNT3033661Glycine maxTheobroma cacao39.9577.487.58161forward
CNT3054138Glycine maxAmborella trichopoda71.4656.882.99288forward
CNT3022163Glycine maxPopulus trichocarpa73.9535.1484.56298forward
CNT30322043Glycine maxAsparagus officinalis72.4634.8982.19292forward
CNT30330123Glycine maxDioscorea rotundata73.729.1784.18297forward
CNT30150001Glycine maxBrachypodium distachyon26.0533.2387.62105forward
CNT3099978Glycine maxOryza rufipogon41.6920.7484.52168forward
CNT30575061Glycine maxOryza barthii46.920.7986.77189forward
CNT30117026Glycine maxOryza nivara3319.7986.47133forward
CNT30333708Glycine maxCynara cardunculus53.626.6781.48216forward

Expression of CNT30708222

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PPHTHPHQQWHPGTVDTLTQDRSCCSQPQ*

>peptide 2 (64 aa)
MEVELPMNVEAIFKPVGGMSQTVDFTLWGIHSTKYEEFLFCTLIICSSTSLVLIFPLNMAEAVR*

>peptide 3 (35 aa)
MLKPSSSRLGECHRLWISHCGESIPQSMRSSCSAH*

Sequence

>CNT30708222
CCTCCTCATACTCATCCTCATCAGCAGTGGCATCCTGGTACTGTTGATACTCTGACACAAGATCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTC
GTCCATGCCTTCCTCCTGAACATAGCAGTGAATTGCTCACTCACTCTACGGAACATCTCCTGAATGGAGGTAGAGTTGCCAATGAATGTTGAAGCCATCT
TCAAGCCGGTTGGGGGAATGTCACAGACTGTGGATTTCACATTGTGGGGAATCCATTCCACAAAGTATGAGGAGTTCTTGTTCTGCACATTGATCATTTG
TTCATCGACCTCCTTGGTGCTCATCTTTCCTCTAAACATGGCTGAGGCAGTGAGGTAGCGGCCGTGTCGAGGGTCAGCAGCACACATCATGTTCTTGGAA
TCC