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Detailed information on CNT30534291


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 1e-73

BLAST vs NONCODE:
NONPOPT002020, E-value = 4e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Eucalyptus grandisOryza sativa26.0628.9784.34166forward
CNT30674320Eucalyptus grandisSetaria viridis55.2653.9182.67352forward
CNT30522155Eucalyptus grandisSetaria italica26.221983.83167forward
CNT30641079Eucalyptus grandisNymphaea colorata29.0424.981.62185forward
CNT30516889Eucalyptus grandisJuglans regia39.441.4979.28251forward
CNT30377201Eucalyptus grandisArabidopsis thaliana24.0226.7588.24153forward
CNT30617295Eucalyptus grandisSesamum indicum31.7149.2782.67202forward
CNT30727961Eucalyptus grandisCorchorus capsularis27.1614.5586.13173forward
CNT30381383Eucalyptus grandisManihot esculenta27.9410.1383.71178forward
CNT30402401Eucalyptus grandisBeta vulgaris20.0910.7787.5128forward
CNT30196370Eucalyptus grandisPisum sativum24.3316.2685.16155forward
CNT30486254Eucalyptus grandisOlea europaea18.5230.8185.59118forward
CNT30708222Eucalyptus grandisGlycine max13.9722.0886.5289forward
CNT30168132Eucalyptus grandisPistacia vera24.3337.7180.65155forward
CNT3092760Eucalyptus grandisSolanum tuberosum27.3225.1486.78174forward
CNT30223001Eucalyptus grandisHordeum vulgare17.5840.2985.71112forward
CNT30390564Eucalyptus grandisTriticum turgidum28.4159.5485.64181forward
CNT30559885Eucalyptus grandisActinidia chinensis26.6932.4487.65170forward
CNT30586804Eucalyptus grandisMusa acuminata26.0621.583.13166forward
CNT30542792Eucalyptus grandisBrassica napus21.6631.882.61138forward
CNT30511260Eucalyptus grandisSolanum lycopersicum28.144.4287.71179forward
CNT30553024Eucalyptus grandisOryza glaberrima26.0611.6284.34166forward
CNT30442409Eucalyptus grandisAegilops tauschii30.1428.6681.77192forward
CNT30253208Eucalyptus grandisAvena sativa28.5715.1489.01182forward
CNT30261872Eucalyptus grandisBrassica rapa27.6319.8983.52176forward
CNT30614070Eucalyptus grandisArabis alpina2712.4586.63172forward
CNT305432Eucalyptus grandisZea mays27.3247.4190.23174forward
CNT3041960Eucalyptus grandisChlamydomonas reinhardtii25.2747.2185.71161forward
CNT30608822Eucalyptus grandisGossypium raimondii21.5120.4582.48137forward
CNT30203517Eucalyptus grandisHelianthus annuus27.1615.3987.28173forward
CNT30627268Eucalyptus grandisDaucus carota27.6314.2283.52176forward
CNT30681848Eucalyptus grandisTriticum urartu37.9927.3480.58242forward
CNT30722533Eucalyptus grandisTriticum spelta41.7646.6780.83266forward
CNT30341625Eucalyptus grandisEragrostis tef26.5317.3386.39169forward
CNT30363168Eucalyptus grandisSorghum bicolor28.4118.3689.5181forward
CNT30595814Eucalyptus grandisOryza meridionalis11.4621.7384.9373forward
CNT30369370Eucalyptus grandisOryza glumipatula25.7524.7484.76164forward
CNT30433292Eucalyptus grandisPapaver somniferum27.7916.8987.57177forward
CNT30570854Eucalyptus grandisVitis vinifera11.7737.319275forward
CNT30706519Eucalyptus grandisPrunus avium35.6427.3883.7227forward
CNT3033661Eucalyptus grandisTheobroma cacao8.9527.489.4757forward
CNT3022163Eucalyptus grandisPopulus trichocarpa26.5319.9387.57169forward
CNT30322043Eucalyptus grandisAsparagus officinalis25.2719.2485.71161forward
CNT30119164Eucalyptus grandisCitrus clementina27.7937.9884.75177forward
CNT3036150Eucalyptus grandisCucumis melo19.1536.284.43122forward
CNT30332119Eucalyptus grandisDioscorea rotundata68.7668.9883.11438forward
CNT30150001Eucalyptus grandisBrachypodium distachyon10.6821.5286.7668forward
CNT30575530Eucalyptus grandisOryza barthii26.0618.3884.34166forward
CNT30117026Eucalyptus grandisOryza nivara35.1633.3380.36224forward
CNT30333708Eucalyptus grandisCynara cardunculus33.5926.4282.24214forward
CNT3049477Eucalyptus grandisCucumis sativus22.7651.0688.28145forward

Expression of CNT30534291

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MTWVSRAHHVLGIPHLLGQFRNGQRTILLRSPGCEWCKSNHKKVEPWERDKVDSKLPKVRVKLTREPKTTCHTTHGSRDEMIEIT

>peptide 2 (75 aa)
MNLHQILLLILLVLLLIISSSILVLLVLGHQIVHVAFSLGEFHLIHSLTCVPVQESLAPKHSSKLLAHSPEHLLD*

>peptide 3 (46 aa)
MIISQHHINSVQSRRQVPGQKKPHLKHEPPPNPPPHPPRTPPHHQQ*

>peptide 4 (46 aa)
MLLSASVNSISSIPSPVYQCKKALRLNIAVNCSLTRLNISWIEAVK*

Sequence

>CNT30534291
CACCGAATTGCAAAACAATAATGAACCACGAATTACAGATGGGAAAGCAATCTAAATGATAATTTCACAACATCACATAAACTCTGTTCAGAGCAGGCGA
CAAGTACCAGGACAGAAAAAACCACACCTCAAGCATGAACCTCCACCAAATCCTCCTCCTCATCCTCCTCGTACTCCTCCTCATCATCAGCAGTAGCATC
CTGGTATTGCTGGTACTCGGCCACCAAATCGTTCATGTTGCTTTCAGCCTCGGTGAATTCCATCTCATCCATTCCCTCACCTGTGTACCAGTGCAAGAAA
GCCTTGCGCCTAAACATAGCAGTAAACTGCTCGCTCACTCGCCTGAACATCTCCTGGATTGAGGCAGTCAAGTAGCGGCCATGACGTGGGTCAGCCGCGC
ACATCATGTTCTTGGCATCCCACATCTGTTGGGTCAATTCCGGAACGGTCAACGCACGATATTGCTGAGATCCCCTGGATGTGAGTGGTGCAAATCCAAC
CATAAAAAAGTGGAGCCGTGGGAAAGGGATAAGGTTGACAGCAAGCTTCCGAAGGTCAGAGTTAAGTTGACCAGGGAACCGAAGACAACATGTCACACCA
CTCATGGTAGCAGAGATGAGATGATTGAGATCACCAA