Detailed information on CNT30721471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678277Triticum speltaSetaria viridis22.6816.8289.2593forward
CNT30185854Triticum speltaSecale cereale77.3241.0194.95317forward
CNT30392169Triticum speltaTriticum turgidum75.6132.43100310forward

Expression of CNT30721471

SRR9114152: 241.99 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAASQKLLSTLSSSSADGSYLAVVAPGVENAPPHAAAARGRRRRRRHRRGRG

>peptide 2 (30 aa)
MERTQSTHIHTHHSLACSEQTGIRKESYKH*

>peptide 3 (40 aa)
LLSYHSRWLNIENTTPHTREFTHGAYTKYTHTHPSLASMQ*

Sequence

>CNT30721471
GTTATTGTCTTACCATAGTAGGTGGTTAAACATTGAGAACACCACACCACACACACGAGAATTTACACATGGAGCGTACACAAAGTACACACATACACAC
CCATCACTCGCTAGCATGCAGTGAGCAGACCGGGATAAGAAAAGAAAGTTACAAGCACTAGTAGACAGTAGTACGAAGCTCAAGACAAACCACATGCAGC
CTCGGACGGCAACGTACGCTATGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAGAAGTTGTTGAGCACCCTCTCTTCTTCTTCGGC
CGACGGCTCTTATTTAGCGGTGGTTGCTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCCGCGCGGGGGCGTCGACGACGACGGCGTCACCGGCGT
GGTCGGGGTC