« Back to Triticum turgidum search


Detailed information on CNT30392031


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185854Triticum turgidumSecale cereale56.269.2191.4535forward

Expression of CNT30392031

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MAASQKLLSTLSSSSADGSYLAVVAPGVENAPPHAAAARGRRRRRRHRRGRGRRHRRRLLNRLPCSCTSTNTHVNHHQFTQ*

>peptide 2 (30 aa)
MERTQSTHIHTHHSLACSEQTGIRKESYKH*

>peptide 3 (39 aa)
MARGWVAAALRSLSRPVSGRGPATTSSHSLSSILRRSWI*

>peptide 4 (30 aa)
LFSFINMVLLSKKNIPEKGKACSEAVIVLP*

Sequence

>CNT30392031
TATTGTTTTCCTTCATAAATATGGTGTTATTGTCTAAGAAAAATATACCAGAAAAAGGAAAAGCTTGCTCTGAGGCTGTTATTGTCTTACCATAGTAGGT
GGTTAAACATTGAGAACACCACACCACACACACGAGAATTTACACATGGAGCGTACACAAAGTACACACATACACACCCATCACTCGCTAGCATGCAGTG
AGCAGACCGGGATAAGAAAAGAAAGTTACAAGCACTAGTAGACAGTAGTACGAAGCTCAAGACAAACCACATGCAGCCTCGGACGGCAACGTACGCTATG
CAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAGAAGTTGTTGAGCACCCTCTCTTCTTCTTCGGCCGACGGCTCTTATTTAGCGGTGG
TTGCTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCCGCGCGGGGGCGTCGACGACGACGGCGTCACCGGCGTGGTCGGGGTCGTCGGCATCGACG
GCGACTGCTTAATCGCCTCCCCTGCAGCTGCACCTCCACCAACACCCATGTAAACCACCATCAGTTCACACAATGAACCCAATAGATCCTCCGCTTAAAC
ATCAAATCTTCTTCTGAAAACCACTGGTGCTAGACTGACCGCTAGTTCTTACGTTCTTCCAGTTTCAGGCCATGTCGGTACCTCTGTGCTAACGTATGTA
AACTGTACCTGTGTTGATGGCGAGAGGTTGGGTGGCGGCCGCCCTGCGGAGCTTGTCGAGGCCCGTCTCCGGGCGAGGCCCGGCCACCACGTCGTCCCAC
AGCTTGTCCAGCATCTTGCGCAGAAGTTGGATCTGATCGGTGCAAGAACTTGTGTCACTCGCTCGTACTACTACCCACCGATAAGATCAAGTGCACTGGC
CGACTGAGTTAGGTGAGACTGGGGGCACTTAAATCATGCAGCGACGGAGATG