Detailed information on CNT30162003


BLAST search results

BLAST vs Swiss-Prot:
sp|O22342|ADT1_GOSHI, E-value = 3e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020944Pistacia veraCitrullus lanatus18.9121.6388.8990forward
CNT30402838Pistacia veraBeta vulgaris21.2212.1587.13101forward
CNT30441966Pistacia veraAegilops tauschii32.7743.8285.26156forward
CNT30253145Pistacia veraAvena sativa25.8439.8186.99123forward
CNT30314202Pistacia veraCamelina sativa27.5233.1685.5131forward
CNT3041636Pistacia veraChlamydomonas reinhardtii15.1326.1886.1172forward
CNT30715236Pistacia veraMalus domestica golden62.1853.0580.41296forward
CNT30355032Pistacia veraLactuca sativa39.2922.8684.49187forward
CNT30426944Pistacia veraPapaver somniferum29.246.4985.61139forward
CNT30329515Pistacia veraDioscorea rotundata25.6315.9785.25122forward
CNT30724403Pistacia veraLupinus angustifolius30.0438.6587.41143forward

Expression of CNT30162003

Peptides detected in this lncRNA

>peptide 1 (93 aa)
FLRWGLAKHSTLKAITNTLVRFRQPTTLEHLILILNQKLNTLNGSCSCFGHSSRNSSHKEINGKTSKTFLRWGLDKNSRCSRWYHGQISGSST*

>peptide 2 (63 aa)
MGAAAVLDTAAETPPIRKSMAKPARPFSDGAWTKTVDAVDGTMDKSVVAPHDRTKGYWNAALE*

>peptide 3 (30 aa)
MGNTGLKELPSYLLHDGRVLSLINHGDFPCK

Sequence

>CNT30162003
CTTTCTCAGATGGGGCTTGGCAAAACATAGTACGCTTAAAGCAATCACCAATACCCTTGTAAGGTTCAGACAGCCTACCACTCTTGAGCATCTCATCCTG
ATTCTGAATCAAAAGCTTAACACGCTCAATGGGAGCTGCAGCTGTTTTGGACACAGCAGCAGAAACTCCTCCCATAAGGAAATCAATGGCAAAACCAGCA
AGACCTTTCTCAGATGGGGCTTGGACAAAAACAGTAGATGCAGTCGATGGTACCATGGACAAATCAGTGGTAGCTCCACATGATCGCACCAAGGGGTATT
GGAATGCAGCATTGGAGTAGTTCCCATATGCAGCACGTCTCTGATACACAGAGGGCCTGTTGAAAGCTCCTTCGCAGCCTTGATGGGAAATACTGGATTG
AAGGAGCTGCCCAGCTACCTTCTGCATGACGGTAGGGTGTTGAGCTTGATCAACCATGGTGACTTTCCCTGCAAAG