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Detailed information on CNT30366407


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676675Sorghum bicolorSetaria viridis13.3745.6492.37131forward
CNT30147901Sorghum bicolorBrachypodium distachyon6.0221.0793.2259forward

Expression of CNT30366407

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MWLLCRTRPMTGALGSLSLSLVSRRVPYQLRYSLTSSYMVGASGCQMPESR*

>peptide 2 (57 aa)
MLQVYINHTHICTTLYKCLDETEEFQARYCLNAGTDRPKSGKSIYLSIPSILSSTSE*

>peptide 3 (33 aa)
MYRLPVVSWRRRGQERRRECLSEGGGGFGGGSRD

>peptide 4 (33 aa)
MKQVTSERKKPSLHETSLLSLLQLMLLSNHPLC*

Sequence

>CNT30366407
GTGAAAGAACAAGTGATATTTCAAAGGCAGGTCACGACGCTGATATATATACTCATCTTTGTGAATGAAACAAGTTACAAGTGAGAGAAAAAAACCCTCT
CTACACGAAACATCATTGCTTTCGCTTCTTCAACTCATGCTTCTTTCCAATCACCCTCTCTGTTAAAGATTGTATCCTCCAGTATTGCATGTTACAAGTT
TATATAAATCACACACATATTTGTACAACATTGTACAAGTGTCTCGATGAGACAGAAGAGTTCCAAGCTCGTTATTGTTTGAACGCTGGAACCGACCGAC
CGAAATCTGGCAAATCAATTTACCTGTCAATCCCCTCAATCTTGTCTTCAACCTCCGAGTAGAGCTCCCTGAGCCTGTCCAGGTAGCGTTGGGTGGGCCC
GGAGAAGTCGAGACCGCCGGCGAAGATGGGTATGACCTTGGCGCCCTTGGCCTCGAGCTCCATGATGACGGCGACGTAGTGCCCGTCGTCGCCGGTGACA
ATGTGGCTCCTCTGCAGGACGAGGCCGATGACGGGCGCGTTGGGGTCCTTGAGCCTGTCGTTGGTGTCCCGGCGCGTGCCGTACCAGTTGAGGTACTCCT
TGACGTCCTCGTACATGGTGGGCGCCAGCGGGTGCCAGATGCCGGAGTCGAGGTAGAGCACAGGGTCGTCGTACTTGATGCCGGCGCCCCTGAGCGCCGG
CACGTAGGAGCCGGCGATCATCTTGAGGAAGTTCTGGAGGTTGTCCGGCGAGCCGCCGAGCCAGAACTGGAGGATTGTTCTTGGTGGCCGGCCGGCGATT
GTTCTCGGCGGCCGCCGTTCCTCGGAAACAGGGCAGGGGGAAGAAGAAGCGAGCAGGGGAGCGCGGGAAGCGGTAGAATGTATAGGTTGCCCGTCGTCTC
CTGGCGGAGGAGAGGACAGGAGCGGCGGAGGGAGTGCCTCAGTGAAGGGGGAGGAGGATTTGGTGGCGGGAGCCGGGACA