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Detailed information on CNT30612626


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114813Arabis alpinaEutrema salsugineum45.24100.4887.62832forward

Expression of CNT30612626

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTKKESSSSSQLTNAKRSSMLVKEEARTSVAND*

>peptide 2 (95 aa)
MNYQFLLKRSMKVHHLSSLHVSSMIDKTQLAQELGELCSHFPVLLFPVLQEAVVVGAVHHQEVGAVHHQVEEEEVLVKGYWYFYHQLILEADGVL*

>peptide 3 (30 aa)
NLYIFLKAGSQGRLGSSTKEVTCFSSFMRS*

>peptide 4 (32 aa)
MATDSPAFLIIKDSKGPLSFFMLVLSLPGDPP*

Sequence

>CNT30612626
GCAACTTGTACATTTTCCTTAAAGCAGGTTCACAAGGAAGATTAGGATCGTCGACAAAGGAAGTCACTTGCTTCTCCAGTTTCATGAGATCTTGATATTC
AAAAGCTGCTTCTCGTAACGCATCAGCTTTACCTTCTGGCCAGTCAAAGTGTTTAAGAACTGCCCTTTCATCGACCTACATAACAAAAGACAGTAATTGG
TTTGTGAGTAACAAAGAACCGAAATAGCGGTTAGAAGCTAATGGTGAAAAGAGGAGTTAATGACCAAGAAAGAGAGCTCTTCATCTAGCCAGCTAACAAA
CGCCAAAAGATCTTCTATGTTGGTGAAGGAAGAAGCTCGAACTTCGGTTGCTAACGACTGAACAAAGTCGCCTTGTGTCTCCACATCCGCTTTCACCTGT
AGTGATCATTTCATATAAATTCAGAGTGCATCAACATAGTAACGAGTCTATTGAGTCAAAGTGAGAACTTACTGCTAAGAGGAATGTTGATCGGTTCTCG
ATTTCTCCAATCATATTGCTCCTAGCTTCAGATGAATTACCAGTTCCTCCTGAAGAGATCAATGAAGGTGCACCATCTTTCTTCGCTTCACGTTTCATCA
ATGATTGATAAAACTCAACTAGCTCAGGAGCTCGGTGAACTTTGTTCCCACTTCCCGGTCCTCCTCTTCCCAGTGCTCCAGGAGGCGGTGGTGGTGGGGG
CGGTCCACCACCAGGAGGTGGGGGCGGTCCACCACCAGGTGGAGGAGGAGGAGGTCTTGGTGAAGGGATATTGGTACTTTTACCACCAGCTGATCTTGGA
GGCGGACGGGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACAGCTTGAGCGTTTTCGCTGGCTTTAACATCGTTTTCGCTGG
CTTCATTAGACTGATCATTTGTTTTCACTGAGCGAACCGTGGGAACCAAAACCGATTTCTCCTTCAGTTGAGCAAGTTTAGGAGGTAAAGCCACATTACC
GCCAAATCTCTCTGCTCTCGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTCTCAACTGCTAACTTATGACGGTCTTTATACGCAGGATACTTCTCA
TCCAAAACACCATCAACCGATTTAGACATCACATGGAATGATGCTGCAACGGAATTCAAAGGCTCACCACCCGGAGAAGAAGCTTCTTGTTGTGTTCTGA
TTCTTGGAAGATTCGGAGTTTCAGGGGTACTAGGACTTTCTTGATCCACTTTACCAAATGTTGTTATGGCTACGGATTCACCTGCATTTCTAATCATCAA
AGATTCTAAAGGACCTCTCTCTTTTTTCATGCTCGTGCTAAGTCTTCCTGGTGATCCTCCATAGAATGATCTTGAAGGCGAGGACTGAACACTCGAATCA
TCTTTACTTTTACCCCATTTTTTAAGCTTCTGGATCAATCCTGGCTTTTTGCTAATACTACTAAACCTACTTGTGGAACTATCCATTGAAGCATTATCGA
AATCATCGCTTCCCGGAGATGAAGGTTGAGAGAAGTTGCTCTCTACATCAGTATCTCCTTGGCCACGTTCTGAACCAGCATACTCTAGCATCAACCTTTT
AGCTTTAGCTTGGGATTTGGGACTTAGATTCTTGCTTAAGTCACGAGCCGAGGTTTTACCAGCTGGTGTCTGGTAATTTCTTAACTCATACCGTAAACAC
GCATTGACCCAACGGAGATAAACCAATTCCTCAACTTCACTAAACCTATTCATCTGAAGCCCTTCCACTTGCTTTAACAAATCCTCATTGTTATGCTTCA
GATTGTTCACCTCTTCTCTTACTTTCGCCACTTTATCGC