Detailed information on CNT30375859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 8e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114813Arabidopsis thalianaEutrema salsugineum60.2465.787.32544forward

Expression of CNT30375859

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MLNVLLSFNCQLMPVFVRRILLIQNIVNRFRHHVERCCNGIQTLTRRRSLLLCSDSWKIRCFRGTRRFLIHLTKCCYGYGFTSVSNHQRF*

>peptide 2 (66 aa)
MCFSLSTANLCLSLYAGYFSSKTLSTDLDITWNDAATEFKPSPGEEACCCVLILGRFGVSGVPGDS*

>peptide 3 (32 aa)
MATDSPAFLIIKDSKGPLCLFILELSLPGDPP*

>peptide 4 (58 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVEEAVHRQVVEEVVVDHHQVKEVLLKAS*

>peptide 5 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

Sequence

>CNT30375859
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGAGGAGGCGGTCCACCGCCAGGTGGTGGAGGAGGTGGTGGTGGACCACCACCAGGTAAAGGAGGTCTTGCTGAAGGCA
AGTTAGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGC
AGCGTTTTCGCTGGCTTTACCTTCGTTAGATTCATTTGACTCGTTAGACTGATCACCTGTGGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTT
AGTTGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAATCTCTCTGCTCTTGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCA
ACTTATGCCTGTCTTTGTACGCAGGATACTTCTCATCCAAAACATTGTCAACCGATTTAGACATCACGTGGAACGATGCTGCAACGGAATTCAAACCCTC
ACCCGGAGAAGAAGCTTGTTGTTGTGTTCTGATTCTTGGAAGATTCGGTGTTTCAGGGGTACCAGGAGATTCTTGATCCACTTGACCAAATGTTGTTATG
GCTACGGATTCACCAGCGTTTCTAATCATCAAAGATTCTAAAGGACCTCTCTGTTTATTCATACTCGAGCTAAGTCTTCCCGGTGATCCTCCGTAAAATG
ATC