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Detailed information on CNT30107782


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C5B3|MT1A_ORYSJ, E-value = 7e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555477Oryza longistaminataOryza glaberrima90.8364.494.95416forward
CNT301037Oryza longistaminataZea mays20.9613.8985.4296reverse complement
CNT30340085Oryza longistaminataEragrostis tef38.4336.7482.95176forward
CNT30104275Oryza longistaminataOryza rufipogon85.5953.4895.15392forward
CNT30578098Oryza longistaminataOryza barthii83.1965.3594.49381forward
CNT30498420Oryza longistaminataDigitaria exilis26.216.6783.33120forward
CNT30117926Oryza longistaminataOryza nivara85.8177.2195.93393forward
CNT30558682Oryza longistaminataPanicum hallii37.5520.1284.3172forward

Expression of CNT30107782

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MIDDRSMQAGILTVARVAPAAGTAAAAMGGLAGLRGRLKLLRLLLRRHTQHHGALGAAALLFQVRVLLSA

>peptide 2 (36 aa)
PLLNEGTKYIYIGNNSQTSLIYSSLHLWIHHYKHST*

Sequence

>CNT30107782
CCACTATTGAATGAAGGTACAAAATACATATACATAGGAAATAACAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGC
ATAGTACGTGAATAGTGAAACCAATAACATAGATAGCATATCGATTAACCCATCACACAGACACTGACACACACCATATATATTGGTCAAGCACCAACCC
AAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACGCACACATGATAGATGATAGATCGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTG
CACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCCGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCA
CCACGGTGCCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCTGCA