CANTATAdb - search

Detailed information on CNT301037

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30447497	Zea mays	Saccharum spontaneum	12.45	41.55	89.53	86	forward
CNT30107782	Zea mays	Oryza longistaminata	13.89	20.96	85.42	96	reverse complement
CNT30575830	Zea mays	Oryza barthii	12.88	25.07	87.64	89	reverse complement

Expression of CNT301037

Peptides detected in this lncRNA

>peptide 1 (69 aa)
DYGDLDAPPRAIKTSVPESTHQPIHNSKPFLVLCSVCVFPKQTKEVEDVLQLRIKLQLRIKLQVRQDVP*

>peptide 2 (79 aa)
MSCSCGSSCNCGSSCKCGKMYPDLEEKSGGGAQASAAAVVLGVAPETKKAAQFEAAGESGEAAHGCSCGDSCKCSPCNC*

>peptide 3 (69 aa)
MSPFFYCLLCACGVSRIKDGAIVWSDSGSPPCMLGVGSVVLVLVHVIVWHRYTPCISDLFAPVCVTMSL*

Sequence

>CNT301037
GATTACGGTGACCTTGATGCACCACCGCGTGCTATAAAAACCAGTGTCCCCGAGTCTACTCATCAACCAATCCATAACTCGAAACCTTTTCTTGTGCTCT
GTTCTGTCTGTGTGTTTCCAAAGCAAACGAAAGAGGTCGAGGATGTCTTGCAGCTGCGGATCAAGCTGCAACTGCGGATCAAGCTGCAAGTGCGGCAAGA
TGTACCCTGACCTGGAGGAGAAGAGCGGCGGGGGCGCTCAGGCCAGCGCCGCCGCCGTCGTCCTCGGCGTTGCCCCTGAGACGAAGAAGGCGGCGCAGTT
CGAGGCGGCGGGCGAGTCCGGCGAGGCCGCTCACGGCTGCAGCTGCGGTGACAGCTGCAAGTGCAGCCCCTGCAACTGCTGATCCTGCTGCGTTGTTTCG
TTTGCGGCATGCATGGATGTCACCTTTTTTTTACTGTCTGCTTTGTGCTTGTGGCGTGTCAAGAATAAAGGATGGAGCCATCGTCTGGTCTGACTCTGGC
TCTCCGCCATGCATGCTTGGTGTCGGTTCTGTTGTGCTTGTGTTGGTGCATGTAATCGTATGGCATCGTTACACACCATGCATCTCTGATCTCTTTGCGC
CAGTGTGTGTGACTATGTCCCTGTAACGATTGGCTCAGTGATTGAATATATATACAATACTGTTTTACTAAGTAAGTATGATTACCTCTTA