Detailed information on CNT30340085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10N03|MT1B_ORYSJ, E-value = 3e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555477Eragrostis tefOryza glaberrima29.6521.9883.8142forward
CNT30107782Eragrostis tefOryza longistaminata36.7438.4382.95176forward
CNT30103968Eragrostis tefOryza rufipogon29.6534.2283.8142forward
CNT30575830Eragrostis tefOryza barthii23.3831.5591.07112forward
CNT30117802Eragrostis tefOryza nivara29.6528.5183.8142forward
CNT30558750Eragrostis tefPanicum hallii3837.6888.46182forward

Expression of CNT30340085

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MHAREPDQYTHGSSLLCTYGSHMEAQLLVPRAHQQLQGLHLQPEPQPQAWAVSPDSAAASNWALCSGATPRTTVAWAPLLCFSSRSGYILLQIK

>peptide 2 (64 aa)
SRQTITKPGFIYSSLCTRRYRARHGHTNIQADLERVWQDRCYDHTNAHGHHGVNKVKVSNHTEE*

>peptide 3 (32 aa)
VDKPLPNQVLYIHHSAPVVTERDTGTQTYRQI*

>peptide 4 (82 aa)
MALPYCVRTVHTWKLNCLFLGHISSCRGCTCSRSRSRRRGRSRRTRPPPRTGPCAPAPRRGPRWPGRRCSASPQGQGTSCCK*

Sequence

>CNT30340085
CAGTAGACAAACCATTACCAAACCAGGTTTTATATATTCATCACTCTGCACCCGTCGTTACAGAGCGCGACACGGGCACACAAACATACAGGCAGATCTA
GAGAGAGTTTGGCAGGATCGATGCTACGACCACACCAACGCACACGGACACCATGGGGTAAATAAAGTTAAGGTTTCAAACCACACAGAAGAGTGATGCA
CGCCCGAGAGCCAGATCAATACACGCATGGCTCTTCCTTATTGTGTACGTACGGTTCACACATGGAAGCTCAACTGCTTGTTCCTCGGGCACATCAGCAG
TTGCAGGGGTTGCACTTGCAGCCGGAGCCGCAGCCGCAGGCGTGGGCGGTCTCGCCGGACTCGGCCGCCGCCTCGAACTGGGCCTTGTGCTCCGGCGCCA
CGCCGAGGACCACGGTGGCCTGGGCGCCGCTGCTCTGCTTCTCCTCAAGGTCAGGGTACATCTTGCTGCAAATAAAGTC