Detailed information on CNT30558682


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C5B3|MT1A_ORYSJ, E-value = 4e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30447497Panicum halliiSaccharum spontaneum9.5939.6189.0282reverse complement
CNT30107782Panicum halliiOryza longistaminata20.1237.5584.3172forward

Expression of CNT30558682

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHTCRDAILHGLFATINTHTHIQDGRQASTR*

>peptide 2 (33 aa)
MHTYPHLQLEPQLQLDPQLQDIFFKLYKEADEG*

>peptide 3 (74 aa)
QIKQTSFIYSSLWTDHYRHTCTPAEMQFCMVYLQRSTHTHTYRTDAKQAQGKVANNHTHGQTTHACSMRSQTDT*

>peptide 4 (89 aa)
MHAGVALAAATAAAAMGGLAGLRRRLELPGLLLRGHAEDDGGLSAAGALLLKVRVHLAATKSTQDLLYQQQQIKLKRLQIEVQILQTTD*

>peptide 5 (35 aa)
MLDEKPDRYMMARLAQAHPYCCSIDHHSRKSHTSS*

>peptide 6 (41 aa)
MQGLHLQLLPQPQPWAVSPDSAAASNCPAFFSGATPRTTVA*

Sequence

>CNT30558682
GACAGATAAAGCAAACTAGTTTTATATATTCATCACTCTGGACCGATCATTACAGACACACATGCACACCTGCAGAGATGCAATTCTGCATGGTTTATTT
GCAACGATCAACACACACACACACATACAGGACGGACGCCAAGCAAGCACAAGGTAAGGTAGCAAATAACCACACACACGGGCAGACGACGCATGCATGC
TCGATGAGAAGCCAGACCGATACATGATGGCTAGGCTAGCTCAGGCTCATCCTTATTGTTGTTCAATCGATCATCACTCGAGAAAGTCACACACAAGCAG
CTGATGAGTAGTAGCTAGCATGCATGCAGGGGTTGCACTTGCAGCTGCTACCGCAGCCGCAGCCATGGGCGGTCTCGCCGGACTCCGCCGCCGCCTCGAA
CTGCCCGGCCTTCTTCTCCGGGGCCACGCCGAGGACGACGGTGGCCTGAGCGCCGCCGGTGCTCTTCTCCTCAAGGTCAGGGTACATCTTGCTGCAACAA
AGTCAACGCAAGATTTGTTATATCAGCAGCAGCAAATTAAATTAAAGAGACTACAGATCGAAGTACAGATTCTTCAGACGACCGATTAGTTGTATATTAC
TAGTAGTATCTTGGTAATCACAACGATCGATGAGGTGATATCGAAAGAAGCAGATATGACCTGCTTGGTGGTCGGTATTTTTAGAAAAAAAGCTGATGCA
TACGTACCCGCACTTGCAGCTGGAGCCGCAGTTGCAGCTTGATCCGCAGCTGCAAGACATCTTCTTCAAATTATATAAAGAAGCTGATGAAGGATGATTG
GAGGCTTTGATGATCGAGCACACTGATCTGAAGAGGCTCAACCCCAGCACCCCGC