Detailed information on CNT30101950


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636813Oryza rufipogonCapsicum annuum25.446.8181.9116forward
CNT3075415Oryza rufipogonBrassica juncea33.9916.4787.1155forward
CNT30369501Oryza rufipogonOryza glumipatula21.7119.6491.9299forward
CNT30573527Oryza rufipogonVitis vinifera66.6719.9182.24304forward
CNT3024838Oryza rufipogonPopulus trichocarpa62.523.1779.3285forward
CNT30149709Oryza rufipogonBrachypodium distachyon32.6849.6791.28149forward
CNT30113881Oryza rufipogonFicus carica26.111.0881.51119forward

Expression of CNT30101950

Peptides detected in this lncRNA

>peptide 1 (62 aa)
GAARVVGVREHGLPVDLAEQVLLAEAGDVEEMRPSEFTSWLCCSALWTWLVTGLPKNCSSEQ*

>peptide 2 (46 aa)
MSFPMAAMARRVLSMDTPMGVPWKLPPCSAFPRETSMSGLSLTELIS

>peptide 3 (32 aa)
LALHGSSAYANTASRSISLSRSFSQKRATWRR*

Sequence

>CNT30101950
TTGGCGCTGCACGGGTCGTCGGCGTACGCGAACACGGCCTCCCGGTCGATCTCGCTGAGCAGGTCCTTCTCGCAGAAGCGGGCGACGTGGAGGAGATGAG
GCCCAGCGAGTTCACGTCCTGGTTGTGCTGCTCGGCGCTCTGGACGTGGTTGGTCACCGGGTTGCCCAAGAACTGCAGCTCGGAGCAGTAGGACGCCATG
GCGATCTCGGCGCCCTTGAAGCCGTAGTCCAAGCTCGGGTTGCGGCCGCCGGAGAGGTTGGAGGGCAGGCCGTTGTTGTAGAAGTCGTTCACCAGCTCGG
AGAACTGCGCGAACATGAGCTTCCCGATGGCGGCGATGGCGAGGCGGGTGTTGTCCATGGACACGCCGATGGGGGTGCCCTGGAAGTTGCCGCCGTGCAG
CGCCTTCCCGCGGGAGACGTCGATGAGCGGGTTGTCGTTGACGGAGTTGATCTCGC