Detailed information on CNT30258796


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT0|PSBM_ATRBE, E-value = 9e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098653Avena sativaSolanum tuberosum25.7512.4289.19111forward
CNT30395992Avena sativaTriticum turgidum30.867.2387.97133reverse complement
CNT3087474Avena sativaVigna radiata20.4219.8690.9188reverse complement
CNT30121209Avena sativaCitrus clementina24.3619.389.52105reverse complement

Expression of CNT30258796

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKGSEVMEVNILAFIATALFILVPTAFLLIIYVKTVSQND*

>peptide 2 (42 aa)
VKIKNKEVMEVNILAFIATALFILVPTAFLLIIYVKTVSQND*

Sequence

>CNT30258796
TGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTGCTTTTTTACTTATTATT
TATGTAAAAACAGTCAGCCAAAATGATTAGTTGGAATTCCAATTAATCATTGAAGAAATGCAAAAGGGATTAAATAAAAAAAATCCAAGTCTTAAATGAA
AGGATCTGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTGCTTTTTTACTTATTATTTATGTAAAAACA
GTCAGCCAAAATGATTAGTTGGAATTCCAATTAATCATTGAAGAAATGCAAAAGGGATTAAATAAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTG
GAATCTTAAAGTGTGGTAGAAAGAACTACAT