Detailed information on CNT30615871


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A9|PSBM_SACHY, E-value = 9e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098653Sesamum indicumSolanum tuberosum49.727.6385.83247forward
CNT30223326Sesamum indicumHordeum vulgare17.131.8489.4185reverse complement
CNT30257546Sesamum indicumAvena sativa16.920.5492.8684forward
CNT30341173Sesamum indicumEragrostis tef17.513089.6687reverse complement
CNT30152144Sesamum indicumPrunus persica17.340.3891.8686reverse complement
CNT30148788Sesamum indicumBrachypodium distachyon15.492585.7177reverse complement

Expression of CNT30615871

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSVPYIGTDLTVPSIFIIVNYICHKHKVYG*

>peptide 2 (30 aa)
MAHHHLAIAFIFLVAGHIYRTNLLLLHYSF*

>peptide 3 (41 aa)
FMCVSRSRILLVKLQVLHECALHRYRPYSTFNIYYSKLYLP*

Sequence

>CNT30615871
ATTTATGTGTGTTTCAAGGTCCAGAATACTGCTAGTGAAGCTACAGGTGCTACATGAGTGTGCCTTACATAGGTACAGACCTTACAGTACCTTCAATATT
TATTATAGTAAATTATATCTGCCATAAACACAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTC
ATATTTATAGAACTAATTTATTGCTACTGCACTATTCATTCTAGTTCCTACCGCTTTTCTACTTATCATTTATGTAAAAACAGCCAGTCAAAATGATTAA
TTCAATTGAATTTTCAAATGAATTTGAATGAAACTTTCCTTCTGAGTTCTTATCAAAAATTGACGAAGTCAAATGAAAAGGATTCCAATTTCACGTCTTA
ACTTAAATGAAATGAGCGGACTATAATCGGCAGTATTCTAAGAGATAGATAGTATGGTAGAAAGAAGGATTCATCTATTTCTTTCTACCATACTATC