« Back to Amborella trichopoda search


Detailed information on CNT3057411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098653Amborella trichopodaSolanum tuberosum23.9529.8780.9267reverse complement
CNT30223326Amborella trichopodaHordeum vulgare9.0637.8387.13101forward
CNT30250739Amborella trichopodaAvena sativa9.1522.7286.27102reverse complement

Expression of CNT3057411

Peptides detected in this lncRNA

>peptide 1 (33 aa)
TRMNSAVAINARIFTSIISFFLFCFAITRDLIP*

>peptide 2 (41 aa)
NSNEQCSSNKCEDIYFHNLILFILLRNNSGSNPIEMMNPSP*

>peptide 3 (35 aa)
MYDLLRSLLRTNIYGSTKCHLGMNPIISIVWPNTV*

>peptide 4 (41 aa)
MPSRHEPHYLHCLAQYRLIHPAIGSLQIKFAYNTRLFLPIY*

Sequence

>CNT3057411
GAACTCGAATGAACAGTGCAGTAGCAATAAATGCGAGGATATTTACTTCCATAATCTCATTCTTTTTATTTTGCTTCGCAATAACTCGGGATCTAATCCC
ATAGAGATGATGAATCCTTCTCCATAATTTGTAAATTCAATGGATTAATTGAATCCTGATGATACTGAATTAGATCAATATCATGAATAACAATATCTAT
CAAATTAATACATCGTCGAGAATTGAATAGTATAATATAGGAAGATCCTTTACCCATACTGAATCCAAAAATGGGATTCCTTGTCCAATCAAGAATTCCA
TTGAATTTCTCATATTTTTTCCACTTTTTCCTTTCTATAATTCATCTTCCTACTTAAATACAATGGGATAATCGAAAGTATCATCCGATTGTAGAGAACC
ACTTTGTTTCCACACAAGTGGTAGGTATCTTCAGTGCTTCACCACCACTATTTGCCCAATAGTGCTATGTTTGCCTTTTTCTATTTTCTGAAGCGAGCCC
GCCTAGTTCTCTTGGAAGGCATACCATGTCCCTCTTAACCAAGTGAGTCCTCTATTGATCTCTAGAGTCACCCTAAAAAGATCCTTCTGAATTTTCTTGA
TTTGATTCAAAACTAAGGTGGGCATTTTAAAAAGGAAATGAGTAAAAAGGGAGGTTGGATAAAGTGGCCTGGATGAGAGGGTTATCCTAGCTATCGACTC
TTTCATGTCGCCAATATCTTTACAAATCTCTCAATGACCAGGTCCCCTTATTCGCTTTTGGGTTTGCCCTGGTATAATGGCCAACCGAAGTATTTAATTG
GCATTTGATCCACCCCACAACCCACTCTTGCAACTAGCTGCTCTACTTTATCAGGGCTGAGATCGATACCTAGGGCTTAAAAAGAAACCCCTAGGGGTTC
CATGTATGATTTATTGAGAAGTTTGCTAAGGACAAATATCTATGGATCAACTAAATGCCATCTAGGCATGAACCCCATTATCTCCATTGTTTGGCCCAAT
ACCGTCTAATCCACCCAGCCATAGGTTCTCTCCAAATCAAATTTGCATACAATACCAGGCTTTTTCTCCCTATCTATTAGCTCCTGACTAATCAATGACC
ACCACGTATATGATA