« Back to Solanum tuberosum search


Detailed information on CNT3096379


BLAST search results

BLAST vs Swiss-Prot:
sp|P45733|PAL3_TOBAC, E-value = 2e-87

BLAST vs NONCODE:
NONSTUT002996, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Solanum tuberosumOryza sativa30.2714.2980.8125forward
CNT30517474Solanum tuberosumJuglans regia49.8834.3387.38206forward
CNT3070920Solanum tuberosumQuercus suber46.4955.3384.38192forward
CNT30435636Solanum tuberosumAegilops tauschii28.8117.2582.35119forward
CNT30242898Solanum tuberosumAvena sativa29.548.2286.07122forward
CNT3075415Solanum tuberosumBrassica juncea27.3612.0184.96113forward
CNT30100429Solanum tuberosumOryza rufipogon28.098.5582.76116forward

Expression of CNT3096379

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSTASAVFLAEINPKEFTSWLCCSALWTWLVTGFAKN*

>peptide 2 (35 aa)
MTLASRCPQPQQFSLLRLTPRNSHLGCVARHFGRG*

Sequence

>CNT3096379
CTGCATTCCTCAAGTTCTCCTCCAAATGCCTTAAGTCGATAGCTTGGCAAAGCGCAACGAGATAGGTTGATGACATTAGCTTCAAGATGTCCACAGCCTC
AGCAGTTTTCCTTGCTGAGATTAACCCCAAGGAATTCACATCTTGGTTGTGTTGCTCGGCACTTTGGACGTGGTTAGTCACTGGATTTGCCAAGAATTGA
AGTTCCGAGCAGTAAGAAGCCATTGCGATTTCAGCTCCTTTGAAACCATAGTCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAATCCATTGT
TGTAATAGTCGTTGACAAGCTCCGAAAATTGGGCAAACATCAATTTTCCAATTGATGCAAGGGCCAATCTTGTATTATCCATGGAGACACCAATAGGGGT
TCCTTGGAAGTTG