Detailed information on CNT3070920


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317648Quercus suberCorylus avellana37.7522.5990.84131forward
CNT3096379Quercus suberSolanum tuberosum55.3346.4984.38192forward
CNT30510882Quercus suberSolanum lycopersicum38.0434.3885.61132forward
CNT30144087Quercus suberMedicago truncatula32.8533.9384.21114forward
CNT30203244Quercus suberHelianthus annuus30.8427.7982.24107forward
CNT3024809Quercus suberPopulus trichocarpa55.9118.7886.08194forward
CNT3036865Quercus suberCucumis melo22.1915.9885.7177forward

Expression of CNT3070920

Peptides detected in this lncRNA

>peptide 1 (51 aa)
CLKSTAWHNATKKVVDMSFKMSTASAVFLEEINPKEFTSWLCCSALWTWLQ*

>peptide 2 (34 aa)
MLLRTLDMVAVRCHCNLCTFETIIQTWIAACCEI*

Sequence

>CNT3070920
TATGCCTTAAATCAACAGCTTGGCATAATGCAACTAAGAAAGTGGTTGACATGAGCTTCAAGATGTCCACAGCCTCAGCTGTCTTTCTTGAGGAAATCAA
CCCCAAAGAGTTTACATCTTGGTTATGTTGCTCCGCACTTTGGACATGGTTGCAGTAAGATGCCATTGCAATCTCTGCACCTTTGAAACCATAATCCAAA
CTTGGATTGCGGCTTGCTGTGAGATTTGAAGGCAATCCATTGTTGTAATAGTCATTGACAAGCTCTGAAAATTGAGCAAACATTAGTTTGCCAACTGAAG
CAATGGCTAGACGTGTGTTATCCATAGAAACACCAATTGGGGTCCCT