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Detailed information on CNT3024978


BLAST search results

BLAST vs Swiss-Prot:
sp|P45731|PAL1_POPKI, E-value = 3e-167

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533290Populus trichocarpaEucalyptus grandis81.950.3379.73602forward
CNT30517474Populus trichocarpaJuglans regia40.1449.1783.05295forward
CNT3092362Populus trichocarpaSolanum tuberosum84.7632.8279.94623forward

Expression of CNT3024978

Peptides detected in this lncRNA

>peptide 1 (61 aa)
TVFLTVLFRFSSMCLRSTAWHRPTKKVVDMSFNMSTASAVFLEEIKPRELTSWLCCSALWT*

>peptide 2 (38 aa)
MIGDRIGKELELRTVRCHGNFGTFEPVIQAWIAATSEV*

>peptide 3 (81 aa)
MAKRVLSIETPIGVPWKFPPCRALFLDTSIKGLSLTELISRSIIFVDVLITSIRGPSHCGDVRRAYRSCLGFCRGSISCNF*

Sequence

>CNT3024978
TGACAGTGTTCTTGACTGTGCTCTTCAGGTTCTCCTCTATGTGCCTCAGGTCAACGGCTTGGCATAGACCAACCAAGAAAGTGGTAGACATGAGCTTCAA
TATGTCAACAGCTTCAGCTGTTTTTCTTGAAGAAATCAAGCCCAGGGAGTTGACATCTTGGTTGTGTTGCTCGGCACTCTGGACATGATTGGTGACAGGA
TTGGCAAGGAATTGGAGCTCCGAACAGTAAGATGCCATGGCAATTTCGGCACCTTTGAACCCGTAATCCAAGCTTGGATTGCGGCCACCAGTGAGGTTTG
AAGGCAATCCATTGTTGTAAAAGTCGTTAACAAGTTCAGAGAACTGTGCAAACATCAGTTTGCCAATTGAAGCAATGGCCAAACGAGTGTTGTCCATTGA
AACACCAATAGGGGTCCCCTGGAAATTCCCTCCATGTAGAGCCTTATTCCTCGACACGTCAATCAAAGGATTGTCATTGACAGAGTTGATTTCTCGTTCG
ATCATTTTCGTTGATGTTCTAATCACTTCGATCAGGGGGCCTAGCCATTGTGGAGATGTTCGAAGAGCGTATCGGTCTTGTTTAGGTTTCTGTAGAGGAT
CGATCTCATGTAATTTCTGAGCTTCTTTAACATAGGCGCTGCCATCTAAAATATGTTCCATGATGGCGGCAGCTTCAATTTGGCCAGGATGATGCTTCAA
TTTATGTGTGAGGTGATCAGTAAACTCAGGTTTTC