Detailed information on CNT30710196


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01861|PAL1_PEA, E-value = 4e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519668Glycine maxSetaria italica10.3921.5187.8474forward
CNT30628474Glycine maxVigna unguiculata33.8535.8183.82241forward
CNT30636696Glycine maxCapsicum annuum22.4712.7683.12160forward
CNT3092362Glycine maxSolanum tuberosum22.758.5483.95162forward
CNT30510907Glycine maxSolanum lycopersicum22.7542.385.19162forward
CNT30573527Glycine maxVitis vinifera23.1710.8184.24165forward
CNT30113844Glycine maxFicus carica40.5913.0981.66289forward
CNT30725977Glycine maxLupinus angustifolius25.8432.887.5184forward

Expression of CNT30710196

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLSITQSLLALTPALEDSASSTFTPWSWAAIAATCEMVRVSPPSLTTGLRYSSSMRLTSSRWLPAIASAAAPQFKGSLALM*

>peptide 2 (97 aa)
SVNSGFPCITSAKIAEITSDKTAMMLASNRTIEAKPEPTAVPFTRARPSLGCNSKNSAPMLANSKASLAFRISPEGPTALEFAPSARQRPVWFSGGR*

Sequence

>CNT30710196
GTCAGTGAATTCAGGCTTTCCTTGCATAACTTCAGCAAAAATTGCTGAAATAACTTCAGACAAGACAGCAATGATGTTGGCTTCAAATAGAACAATTGAG
GCCAAGCCAGAACCAACAGCAGTGCCATTCACAAGGGCAAGGCCTTCCTTAGGTTGCAACTCAAAGAACTCAGCACCGATGTTGGCCAATTCAAAGGCTT
CTTTGGCATTCAGAATCTCACCAGAGGGTCCAACAGCCTTGGAGTTTGCTCCTTCTGCAAGGCAGCGCCCTGTTTGGTTCTCCGGTGGGAGGTAGCACCG
AACCCGGTGGTGACGCCGTAGCTGTCAGTGCCCTTGTTCATGCTCTCCATCACCCAGTCACTGCTGGCCTTAACACCGGCCCTGGAGGACTCCGCCAGCT
CCACCTTCACCCCCTGGTCGTGGGCCGCGATCGCCGCGACCTGCGAGATGGTCAGGGTCTCTCCACCGAGCTTGACGACGGGCCTCCGGTACTCCTCTAG
CATGCGCTTGACCTCGTCGAGGTGGCTCCCAGCCATAGCCTCCGCAGCCGCACCCCAGTTCAAGGGGTCATTAGCACTAATGTAGCCATTGTTGCTAACA
TTTACACAGAAGTTGGTGTTGGCAGCATTTGCTTCTGATGCCATGTTATGGTGAGTGGAGGGAGATGGAGCTAGGTTTAAAAATGAAGGAATGAGGAGAA
TAATATTGTTAT