Detailed information on CNT3024999


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3086464Populus trichocarpaVigna radiata33.241.0985.5483forward
CNT3082721Populus trichocarpaBrassica juncea90.478.283.63226forward

Expression of CNT3024999

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLTRTLQLQASRTASEIWSQSLSGCPSFTDSDVNRKVSAIS

>peptide 2 (44 aa)
QFGGLVSGIAKHMALITSTNLFRALGEMAMYTLSNIRTLLLNVN*

>peptide 3 (43 aa)
SIRGSRQWHSQTYGLDHQHQSLPGSWRNGHVHPEQYQDFVAQC*

Sequence

>CNT3024999
ATCAATTCGGGGGTCTCGTCAGTGGCATAGCCAAACATATGGCCTTGATCACCAGCACCAATCTCTTCCGGGCTCTTGGAGAAATGGCCATGTACACCCT
GAGCAATATCAGGACTTTGTTGCTCAATGTTAACTAGAACCTTGCAATTGCAAGCATCGAGAACAGCATCAGAGATCTGGTCACAGAGCTTATCTGGGTG
TCCCTCGTTCACTGATTCAGATGTGAATAGGAAAGTCTCTGCCATTTCTT