Detailed information on CNT30355344


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SV31|PIP25_ARATH, E-value = 7e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Lactuca sativaOryza sativa21.078.2287.363forward
CNT30730253Lactuca sativaCorchorus capsularis22.0714.5187.8866forward
CNT30404919Lactuca sativaBeta vulgaris20.49.7488.5261forward
CNT30221191Lactuca sativaHordeum vulgare18.3925.9489.0955forward
CNT3084810Lactuca sativaVigna radiata46.4941.3786.33139forward
CNT30437070Lactuca sativaAegilops tauschii25.4215.3885.5376forward
CNT30681057Lactuca sativaTriticum urartu25.427.4684.2176forward
CNT30477244Lactuca sativaArabidopsis halleri36.4518.4787.16109forward
CNT30331328Lactuca sativaDioscorea rotundata29.116.9683.9187forward
CNT30604398Lactuca sativaOryza punctata21.072.6688.8963forward
CNT30112022Lactuca sativaFicus carica43.8146.4586.26131forward

Expression of CNT30355344

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSPQVNENEDHATEGPCDTEDANAAALIKV*

Sequence

>CNT30355344
ATCATGTACAACACTGCCCTAATCAACGACACCTTCCTTGCCAAGAACAGACCGAATGTCACCGCAGGTAAACGAGAATGAAGATCATGCCACCGAAGGC
CCATGCGATACCGAGGATGCCAACGCCGCCGCACTGATCAAGGTCTAAGGCCGGGTCAGTCTGGCTTTTGTAGCCGATGACTGTTAAGACGGTCACGTAA
AGGAAGAGGAGGGTGGCAATGAATTCGGCGATGACAGCTCTGTAGAAAGACCACTTGGTGAGCTCCTCGGCGTCGATCAAGGGCGCCGGAGGTGGGTCA