Detailed information on CNT30477244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289867Arabidopsis halleriTriticum aestivum18.8124.1381.98111forward
CNT3084810Arabidopsis halleriVigna radiata16.128.2784.2195forward
CNT30543361Arabidopsis halleriBrassica napus31.5360.1986.02186forward
CNT30202937Arabidopsis halleriHelianthus annuus18.1425.9783.18107forward
CNT30355344Arabidopsis halleriLactuca sativa18.4736.4587.16109forward

Expression of CNT30477244

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MNIVRALKSFDETDSTNSTQTLSHHVKHRPNQRHLPSQEQSQCHRRPTRCQEFQRRHSQLHRLLYRTESCNR*

>peptide 2 (42 aa)
MTVKTVTYKKRRVATNSAMTALYKDHLVSSSASKNGVGGGSS*

>peptide 3 (40 aa)
RNVGVSSVAFGISGREDCVDEHECTNNLRRKSGACVVAVS*

Sequence

>CNT30477244
CCGGAACGTGGGAGTCTCTAGCGTTGCGTTTGGGATCAGTGGCCGAGAAGACTGTGTAGACGAGCACGAATGTACCAATAATCTCCGCCGCAAGTCCGGT
GCCTGTGTTGTAGCCGTCAGCTAGAAAGTTGGCTCCTCCACCGTAATGAACATAGTGAGAGCTTTGAAAAGCTTTGACGAAACCGACTCCACAAATAGCA
CCCAAACACTGAGCCACCATGTAAAGCACCGCCCTAATCAGCGACACCTTCCGAGCCAAGAACAATCCCAATGTCACCGCCGGCCCACGCGATGCCAAGA
ATTCCAACGCCGCCACAGTCAACTCCACCGGCTTTTGTATCGGACTGAATCTTGTAACCGATGACAGTTAAAACGGTGACGTATAAGAAGAGGAGAGTGG
CTACGAACTCGGCGATGACTGCTCTGTACAAAGACCACTTGGTAAGCTCCTCCGCGTCGAAAAACGGAGTAGGCGGAGGATCTTCGTAGTCCCTCGTCTG
AAATCCCTCAGGTCCTTCCACGTCTTTCGCCATATGTGTTAATGGATGTTTCTTGAGTTTCTTAGAAAGTGTTTTGCTTTGTGGTTGTTG