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Detailed information on CNT30361937


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H8T0|RGP1_ORYSJ, E-value = 3e-75

BLAST vs NONCODE:
NONMEST001700, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Sorghum bicolorOryza sativa21.248.2594.27262forward
CNT30143198Sorghum bicolorLolium perenne13.1965.4695.71163forward
CNT30231412Sorghum bicolorAnanas comosus23.7182.0790.78293forward
CNT30683328Sorghum bicolorTriticum urartu20.5563.591.73254forward
CNT30721681Sorghum bicolorTriticum spelta11.8146.9590.41146forward
CNT30327267Sorghum bicolorAsparagus officinalis16.6761.6891.75206forward

Expression of CNT30361937

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MASWQHPLFPVGTKALELATEHSQLLRRIQIRNARLRPSSYGSTRLTARG*

>peptide 2 (52 aa)
MFLTDHSAASSGDQNSEFDWTAGYYFQNHDAASSIIRIMNVVMWILHGGYKN*

>peptide 3 (36 aa)
MGSHKQGPLAKMKRTLVTDKALTTSTRWQPSSNPRA*

>peptide 4 (45 aa)
MSSSSLSSGVEGTDAPGTVTVPAIAAGRGGGGGWGGDLGSRGGWEA

Sequence

>CNT30361937
AGTGCAGTAAAATAGCAGGTGTGCAATGATGTAGCTCTATGTCAGATCGTGGCACCTGCTGCCTAGATGGTAAAATTCATAAGGTAAAATTCATAATTTG
ATCACATAGCTGGATATTACTGCTAATGTTTCTGACAGATCACAGTGCTGCTAGCTCAGGTGATCAAAATTCAGAATTTGATTGGACTGCTGGATACTAC
TTCCAAAATCATGATGCTGCTAGTTCCATTATCAGAATTATGAATGTAGTGATGTGGATCTTACATGGAGGATATAAAAACTGAACTAATGTGAATTACA
AAAGTTGTCACTGCTCGGATCTGATCTGAAGCAACCATCTAGTCCAGATCCAATGACATTAGAGCATTCTGGCACGTTTTGGTTATTAAGTAAATGACAA
ACTGAATGTGCCAAGGTTGTGATCCGCGATGGGATCACATAAACAAGGACCCCTGGCCAAGATGAAAAGGACCCTTGTAACCGACAAGGCACTAACTACC
AGTACGAGGTGGCAACCATCTAGCAACCCCCGAGCGTAGGTATGGCTAGCTGGCAGCATCCCCTGTTTCCTGTCGGAACGAAGGCACTAGAGCTAGCTAC
TGAGCACAGCCAGCTGCTACGACGGATCCAGATCCGTAATGCTAGACTACGCCCAAGCTCCTACGGATCAACGCGTTTGACCGCGCGCGGCTAGATCCAG
ATCTGATCCGGGCGGATCTGGGCCAATTCGATCGAATTTGACCCAGATCCGGCGTCAAGACCTTCGGATCCACGCGGAATTGAACGAACGAGACGAAACG
AGAGAGAAGAAGGAGGCGGGGGCTTACGAAGCAGTCGTCGTCGATGGTGTAGATGTACTTCTTCTTGGAGACCATGTAGCCGAAGCAGCGGCACGCCGAG
TCCTTGAAGGAGATGCAGGAGGCCTTGGGGCCGAGGATGCGGTTGATGTCGTTGCGGTTGTAGAGCTCGTAGTCGAAGCCCTCGGGCACCTTGATGGTCT
TGGTGGGGTCGCCGTCCTGCACGATGATGAGGTGGTAGGGCTGGAAGAAGGGCCTCCACATCTCGAGGAAGTCGAGGTTGCGGATCGTCGGGATCACGAT
GTCCAGCTCGTCCTTGAGCAGCGGCGTCGAGGGGACCGACGCCCCCGGGACCGTCACCGTGCCCGCCATTGCCGCAGGTCGTGGTGGTGGTGGTGGGTGG
GGAGGAGATCTTGGGAGCAGAGGAGGTTGGGAGGCG