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Detailed information on CNT30596003


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H8T0|RGP1_ORYSJ, E-value = 5e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375225Oryza meridionalisArabidopsis thaliana21.7418.7287.1470forward
CNT30231412Oryza meridionalisAnanas comosus25.1622.6995.0681forward
CNT30721681Oryza meridionalisTriticum spelta28.5729.5890.2292forward

Expression of CNT30596003

Peptides detected in this lncRNA

>peptide 1 (85 aa)
EGDAGGLGAEDPVDVVAVVELVVEALGDADGLGRVADRRDHDVQLVLEQRRRRHRRRRHRHRPRHDLSLSPGSRARGGGGGGGEV*

>peptide 2 (76 aa)
MVLVGLRIVGITMSSSSLSSGVDGTDADGTVTVPAMISPSPLDLARAEEVEEEVRCEVCVWVWVGGEEEAIYRAGAP

Sequence

>CNT30596003
TGAAGGAGATGCAGGAGGCCTTGGGGCCGAGGATCCGGTTGATGTCGTTGCGGTTGTAGAGCTCGTAGTCGAAGCCCTCGGGGACGCGGATGGTCTTGGT
CGGGTTGCGGATCGTCGGGATCACGATGTCCAGCTCGTCCTTGAGCAGCGGCGTCGACGGCACCGACGCCGACGGCACCGTCACCGTCCCCGCCATGATC
TCTCCCTCTCCCCTGGATCTCGCGCGCGCGGAGGAGGTGGAGGAGGAGGTGAGGTGTGAGGTGTGTGTGTGGGTTTGGGTGGGTGGGGAGGAGGAAGCGA
TTTATAGAGCGGGAGCTCCGGG