Detailed information on CNT30708588


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 5e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Glycine maxSetaria viridis71.1150.6393.75160forward
CNT30378667Glycine maxArabidopsis thaliana43.118.6795.8897reverse complement
CNT3088853Glycine maxVigna radiata71.1139.5197.5160forward
CNT30664460Glycine maxTriticum dicoccoides68.8942.8296.13155reverse complement
CNT30136319Glycine maxLolium perenne71.1128.1295160forward
CNT3068134Glycine maxLeersia perrieri68.4442.5492.86154forward
CNT30126841Glycine maxCorymbia citriodora71.1143.0194.38160reverse complement

Expression of CNT30708588

Peptides detected in this lncRNA

>peptide 1 (73 aa)
GSFPLRWNAPLPIHFYIPQLRPLPPLSLSGHLGALVGDPGCFPLDDEAYPPSSRWPTLTLVILRSYLVFRVCLD

>peptide 2 (37 aa)
RVLPSKVERSPTDSFLHPTASAPTSFITERSFRGLSW*

Sequence

>CNT30708588
GCGGGTCCTTCCCTCTAAGGTGGAACGCTCCCCTACCGATTCATTTTTACATCCCACAGCTTCGGCCCCTACCTCCTTTATCACTGAGCGGTCATTTAGG
GGCCTTAGTTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCGCTGGCCGACCTTGACCCTTGTTATTTTGAGGTCATAC
CTAGTATTCAGAGTTTGCCTCGATT