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Detailed information on CNT30664460

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 3e-90

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675397	Triticum dicoccoides	Setaria viridis	74.31	85.13	96.65	269	reverse complement
CNT30524664	Triticum dicoccoides	Setaria italica	99.72	26.37	98.34	361	forward
CNT30639555	Triticum dicoccoides	Nymphaea colorata	100.28	21.25	95.59	363	forward
CNT30378667	Triticum dicoccoides	Arabidopsis thaliana	47.79	15.46	97.11	173	forward
CNT30500477	Triticum dicoccoides	Coffea canephora	99.72	19.82	97.23	361	forward
CNT30269781	Triticum dicoccoides	Chenopodium quinoa	99.72	12.22	95.57	361	forward
CNT30525072	Triticum dicoccoides	Phaseolus vulgaris	23.2	19.67	96.43	84	reverse complement
CNT30202034	Triticum dicoccoides	Pisum sativum	99.72	21.2	93.07	361	reverse complement
CNT30503431	Triticum dicoccoides	Nicotiana attenuata	90.61	23.75	96.34	328	reverse complement
CNT30708588	Triticum dicoccoides	Glycine max	42.82	68.89	96.13	155	reverse complement
CNT3090649	Triticum dicoccoides	Solanum tuberosum	99.72	13.2	96.68	361	forward
CNT30221722	Triticum dicoccoides	Hordeum vulgare	88.95	32.86	99.38	322	reverse complement
CNT30588765	Triticum dicoccoides	Musa acuminata	27.62	14.33	98	100	reverse complement
CNT3088853	Triticum dicoccoides	Vigna radiata	73.76	65.93	95.88	267	reverse complement
CNT30511396	Triticum dicoccoides	Solanum lycopersicum	81.22	32.13	94.56	294	forward
CNT30554621	Triticum dicoccoides	Oryza glaberrima	54.14	91.16	98.98	196	forward
CNT30442428	Triticum dicoccoides	Aegilops tauschii	97.79	45.21	98.87	354	forward
CNT3062651	Triticum dicoccoides	Arabidopsis lyrata	99.72	43.39	96.68	361	reverse complement
CNT30136319	Triticum dicoccoides	Lolium perenne	99.72	63.44	99.45	361	reverse complement
CNT3068134	Triticum dicoccoides	Leersia perrieri	83.7	83.7	94.72	303	reverse complement
CNT30655263	Triticum dicoccoides	Rosa chinensis	99.72	20	93.35	361	forward
CNT30206293	Triticum dicoccoides	Helianthus annuus	99.72	16.43	97.23	361	forward
CNT30126841	Triticum dicoccoides	Corymbia citriodora	85.91	83.6	92.93	311	forward
CNT30370808	Triticum dicoccoides	Oryza glumipatula	54.14	90.32	99.49	196	forward
CNT30412183	Triticum dicoccoides	Papaver somniferum	99.72	12.82	96.12	361	forward
CNT30646402	Triticum dicoccoides	Cannabis sativa	99.72	28.54	93.63	361	reverse complement
CNT30577320	Triticum dicoccoides	Oryza barthii	54.14	45.16	98.98	196	reverse complement

Expression of CNT30664460

Peptides detected in this lncRNA

>peptide 1 (46 aa)
CVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 2 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGMQRQPGGLPRSSHPLKSA*

Sequence

>CNT30664460
TGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTA
GATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGC
CCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGATGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCAC
TGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATT