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Detailed information on CNT3088853


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 1e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Vigna radiataSetaria viridis63.4681.3394.16257forward
CNT30639555Vigna radiataNymphaea colorata67.1615.9395.96272reverse complement
CNT30513443Vigna radiataJuglans regia65.9336.2398.5267reverse complement
CNT30500477Vigna radiataCoffea canephora65.9314.6698.88267reverse complement
CNT30616920Vigna radiataSesamum indicum57.7823.9586.32234forward
CNT30730500Vigna radiataCorchorus capsularis65.9322.4998.5267reverse complement
CNT30202031Vigna radiataPisum sativum65.9323.4692.88267forward
CNT30503431Vigna radiataNicotiana attenuata65.9319.3398.13267forward
CNT30708588Vigna radiataGlycine max39.5171.1197.5160forward
CNT30638683Vigna radiataCapsicum annuum37.2829.2694.04151forward
CNT30190954Vigna radiataSecale cereale65.9330.2796.25267forward
CNT30221722Vigna radiataHordeum vulgare65.9327.2495.88267forward
CNT30554621Vigna radiataOryza glaberrima37.0469.7794150reverse complement
CNT30442488Vigna radiataAegilops tauschii70.8637.6694.08287reverse complement
CNT30248027Vigna radiataAvena sativa65.9327.4194.38267forward
CNT30664460Vigna radiataTriticum dicoccoides70.8679.2894.43287reverse complement
CNT30310298Vigna radiataCamelina sativa65.9317.5197.75267forward
CNT3062651Vigna radiataArabidopsis lyrata65.9332.0998.13267forward
CNT30136319Vigna radiataLolium perenne65.9346.9295.88267forward
CNT3068134Vigna radiataLeersia perrieri56.5463.2693.45229forward
CNT30655263Vigna radiataRosa chinensis65.9314.7995.13267reverse complement
CNT30206293Vigna radiataHelianthus annuus65.9312.1598.88267reverse complement
CNT30126841Vigna radiataCorymbia citriodora60.4965.8694.29245reverse complement
CNT30714892Vigna radiataMalus domestica golden33.3319.3788.15135reverse complement
CNT30720907Vigna radiataTriticum spelta65.9326.1596.25267forward
CNT30363927Vigna radiataSorghum bicolor35.835.9893.79145reverse complement
CNT30370808Vigna radiataOryza glumipatula37.0469.1294150reverse complement
CNT30154922Vigna radiataPrunus persica65.9315.8195.51267forward
CNT30412183Vigna radiataPapaver somniferum65.939.4897.38267reverse complement
CNT30646402Vigna radiataCannabis sativa66.1721.1995.9268forward
CNT30332807Vigna radiataDioscorea rotundata65.9316.1697.75267forward
CNT30576251Vigna radiataOryza barthii47.4134.3594.79192reverse complement

Expression of CNT3088853

Peptides detected in this lncRNA

>peptide 1 (42 aa)
KVARSGPYYALFQGWLLLGKPPGCLCTPTSFITERSFRGLSW*

>peptide 2 (32 aa)
GRSIRTLLRTLSRVAASRQTSWLSLHPYLLYH*

Sequence

>CNT3088853
AAGGTCGCTCGATCAGGACCCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTCTGCACCCCTACCTCCTTTATCACTG
AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCTTGTTA
TTTTGAGNTCATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGCGGCCCGCACCGAAACAGTGCTTTACCCCTAGATTCAGAGAATAAAT
ATTGTAAGAAAACGGAGAGAGAGGAATATATCAGTATTTACTAAATTTCTGTTGTTCTTTCTCGAGGCCCTGGTACCTCGAATACCAGATTTCACTGTCA
TACCT