Detailed information on CNT30696354


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30399969Oryza sativaTriticum turgidum29.5825.9788.44147reverse complement
CNT30552029Oryza sativaOryza glaberrima38.2332.5981.58190forward
CNT30444949Oryza sativaSaccharum spontaneum56.9432.9188.69283forward
CNT30351702Oryza sativaEragrostis tef20.9311.9782.69104forward
CNT30371121Oryza sativaOryza glumipatula33.851.8599.4168forward
CNT30558873Oryza sativaPanicum hallii18.7126.2789.2593forward

Expression of CNT30696354

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VDPRVTNIDEMYCGSDIACSSTRLCTSEWSSTWPRRRG*

Sequence

>CNT30696354
GTCGATCCCAGAGTCACAAACATCGATGAAATGTACTGCGGCAGCGACATAGCATGCAGTTCAACACGACTGTGTACGAGTGAGTGGTCGTCTACTTGGC
CGCGGCGTCGAGGGTGAGGAACGGGCGCTCGCCGTTGAAGTTGCCCGGGGGGTCGTAGTTGCAGGTGATGAACACGCCGCGGTTCGCCGCGCACACGACG
CGGGCGCAGCCGATGCGCACCGACTTGCGCCACACCACCTGGGTGTAGTGGCCGCACACCTTGCCCGGGTCGCACGTGTTGGTGTCGTAGTGGTAGTTCT
TCTTCTCGCCCACCCACGACGCCACCGCGTCGGCGGCGCTCCAGGCGCGCCCCGCCGAGCCCCAGAAGATGTTGACGTAGTCCTGCGGCGTGTTCTGCGC
CGAGGTGGTGGTGGTGGCCGCCATGGCCAGCGAGATGGCCACGGCGAGCACGGCGGCGAGGCTGACCTTGGAAGGTGCCATTTTCTGTCTCGTGTTG