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Detailed information on CNT30351702


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00008|PRMS_MAIZE, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696354Eragrostis tefOryza sativa11.9720.9382.69104forward

Expression of CNT30351702

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MCACSTAKSCAGLAWSRRRDTATEPGEQDRRTTPTRSRTQLLVLEVHSMVETSVLQLVRSNSISVASHTSLTVHET

>peptide 2 (45 aa)
MHGSREKLAYLAGSSAPGVSAGRAAEGSEVQTQKGFCPSRSPCGS*

Sequence

>CNT30351702
GATTCTCATAAGGTCGAGCCATGAACAAAACAGACGAGGACAAGCATATGCTCGTCACTCTCATGGCGTACCATGCATCTAACTGAACTCCCAACAAACA
TTTAGCTACGGTGTGCATGAACAAATGCAAAACGGCCAAAACATGATTAGCTAGGAACGCTGTGTGGCACACCATGCACGGAAGTCGTGAGAAGCTAGCC
TATCTAGCAGGCAGCTCAGCCCCTGGTGTTTCTGCCGGCCGGGCAGCCGAGGGATCAGAAGTGCAAACTCAGAAGGGCTTCTGCCCCTCGAGGTCGCCCT
GCGGCTCGTAGTGGCATGTCATGAGCGTGGCCCCGCTGTCGCAGTCGACGACGGCGCAGCCGAGCTCCTTGGTCCCCTGCCACACCACCTGCTTGTAGTG
TCCGCACTCCTTGCCCTCCGCGCACGAGTTGGAGTCGTAGTTGTAGTAGTCCTTCTCCGCCGCCCACGCCGCCACCGCGTCGCTCGGCAGCCAGGTGCCG
CCCGCGGAGCCCACGAACACGTTCACGCCAGGCGCCGGCGACGCCGCCGCGCAGTTGGCCTTGTACTGCGACGCCCACTGCTCCGCCCTGTCCGCCAGCT
CCTGGGTGTACTTGAGCGGCCGCTGGAAGTGGCACGCCCGGATGTGCGCGTGCTCCACCGCGAAGTCCTGCGCCGGGTTGGCCTGGAGCAGGCGGCGAGA
CACGGCCACCGAGCCGGGAGAGCAGGACAGGAGGACCACCCCCACCAGGAGCAGGACCCAACTGCTAGTGCTTGAGGTGCACTCCATGGTCGAGACCAGT
GTTCTCCAGCTAGTTAGGAGTAATTCGATTTCTGTAGCTAGCCACACTAGTCTAACAGTGCACGAAACG