Detailed information on CNT30558873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696354Panicum halliiOryza sativa26.2718.7189.2593forward
CNT30444949Panicum halliiSaccharum spontaneum26.5510.9389.3694forward
CNT30371110Panicum halliiOryza glumipatula20.6224.6689.0473forward
CNT30116570Panicum halliiOryza nivara20.6210.5687.6773forward

Expression of CNT30558873

Peptides detected in this lncRNA

>peptide 1 (36 aa)
IIYKTVGERTRVVATYQVPSRYTCLFSRNNTTCIHV*

>peptide 2 (43 aa)
MMNTPRLTKSCGVFWAEAVVAMASAMDTTAKAATRLLENSMDDL

>peptide 3 (36 aa)
MYRDTGTNEFRCGAPYLAAASSARNGLSPLKLPGGS*

Sequence

>CNT30558873
ATCATATATAAGACTGTTGGTGAGCGCACACGAGTAGTGGCCACGTACCAAGTGCCAAGTAGATATACTTGCTTATTTAGCAGGAATAATACTACGTGCA
TCCATGTATAGAGACACTGGAACGAACGAGTTCAGGTGCGGCGCACCCTACTTGGCCGCCGCGTCAAGTGCGAGGAACGGCCTCTCGCCGTTGAAGTTGC
CGGGTGGGTCGTAGCTGCAGATGATGAACACGCCGCGGTTGACGAAGTCCTGCGGCGTGTTCTGGGCTGAGGCGGTGGTTGCAATGGCCAGTGCCATGGA
CACCACGGCAAAGGCGGCTACTAGACTCTTGGAAAACTCCATGGATGATCTTCT