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Detailed information on CNT30399969


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696354Triticum turgidumOryza sativa25.9729.5888.44147reverse complement
CNT30444949Triticum turgidumSaccharum spontaneum26.3317.3391.28149reverse complement
CNT30345634Triticum turgidumEragrostis tef19.4325.5883.64110reverse complement
CNT30371121Triticum turgidumOryza glumipatula17.1429.9484.5497reverse complement

Expression of CNT30399969

Peptides detected in this lncRNA

>peptide 1 (53 aa)
PARCAGTRRWCGASRPASAARAWSAPGTGASSHLQLQPPGQLQRRAPVRVPHP*

>peptide 2 (58 aa)
RQGVRAHAGGVAQVDPHRLRARGLRREPGRLHTCNYNPPGNFNGERPFAFLTHDAEAK*

>peptide 3 (60 aa)
GKVCGHTQVVWRKSTRIGCARVVCAGNRGVFTPATTTPRATSTASARSRSSPMTPKPSEV*

Sequence

>CNT30399969
CCGGCAAGGTGTGCGGGCACACGCAGGTGGTGTGGCGCAAGTCGACCCGCATCGGCTGCGCGCGCGTGGTCTGCGCCGGGAACCGGGGCGTCTTCACACC
TGCAACTACAACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCGCGTTCCTCACCCATGACGCCGAAGCCAAGTGAGGTATAACGAAGACAAAGATCA
TGGGACTTGAACATGTTATTAGTAGAGAAATGGTACTCTTGTGCACCAGTACGCCGAGACCTGGCCAATGAAACAACAGAAAGACACAAGTTTGTATAGG
TTAATGACTTAAACTTTAAATATTTTTTGTGAAGGACTTAATTCTGATTAATCAGGAAAAATAATGGGCTGGTGTGCTTGATAGTTTGGCATGGGTTCTT
ACTGCGGCTTTGCTATATTGCAGACATTAAAATCCACATGGCGATTGGAATTCATCTAGGCTGCGTAGTGTTCCTTCTCACTCAGCCTATTGTCCGTCAC
AGGGAGGAGTGGTGACACGACATGGGTAGGGCTATGGTGCAGAACGTGGTCTGTATTTTGCAGGGA