« Back to Saccharum spontaneum search


Detailed information on CNT30444949


BLAST search results

BLAST vs Swiss-Prot:
sp|P35792|PR12_HORVU, E-value = 1e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696354Saccharum spontaneumOryza sativa32.9156.9488.69283forward
CNT30300817Saccharum spontaneumTriticum aestivum30.4726.8782.44262forward
CNT30399969Saccharum spontaneumTriticum turgidum17.3326.3391.28149reverse complement
CNT30552029Saccharum spontaneumOryza glaberrima22.0932.5983.68190forward
CNT30685221Saccharum spontaneumTriticum urartu26.0525.4882.59224forward
CNT30371121Saccharum spontaneumOryza glumipatula17.9147.5386.36154forward
CNT30116570Saccharum spontaneumOryza nivara29.8837.1986.38257forward
CNT30558873Saccharum spontaneumPanicum hallii10.9326.5589.3694forward

Expression of CNT30444949

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAAIAMATAKAAARLLLFRNAMFASFSIDLLG*

Sequence

>CNT30444949
AGGTTGTGCTCGTTGAGAAAAAAAACATGTAGAACATTATTTTTCACATAGTGTATTGCAAAATAAAGTTGCATATTATACATATATAGCGCGGAAAGCA
TTAGCATTTTTTTTCCTAAAAAAGTATTAGCATTTTATTACACAAAACATCACAAACCCGGCCACATACACAAATATAAGGGTACAGTTGCAAAAAAAAT
ACAAATATAAGGGTACACAAATGCTACCACGACCGGTGCGACCGGAGGCATCGGAGCTGGTAGAGTTGCGCACGGACTCTACTTGGCAGCGGCGTCAAGG
GTGAGGAACGGGCGCTCGCCGTTGAAGTTGCCCGGGGGGTCGTAGCTGCAGACGATGAAGACGCCGCGGTTGGCGGCGCAGACGACGCGCGCGCAGCCGA
TGCGGGTGGACTTGCGCCACACCACCTGCGTGTAGTGCCCGCACACCTTGCCGGGGTCGCAGCTGTTGCTGCTCAGGTGGTAGTTCTTCTTCTCGTCCAC
CCACGACTTGACCGCGTCGGCGGCGCTCCACGCCCGCCCCGCGGAGCCCCAGAAGATGTTCTCCCCGAACGGCCCGCCGGAGTGCACCAGCTTGCAGTCG
CCGGCGCGCTTCGCGGCGTAGTCCTGCGCGTACTTGGCCACCTTGGCGTCCCACGCCACCGGGCCCACGCCGTCCGCGGCGCGCGCGCGGTTGTGCAGGT
CCACGAAGTCCTGCGGCGTGTTCTGCGCTGAGGTGGTGCTTGCTATGGCGGCCATTGCCATGGCCACAGCGAAGGCAGCTGCTAGACTACTCCTCTTCAG
AAACGCCATGTTTGCTAGCTTCTCGATCGATCTTTTGGGATGAGAGAAAGCTAACTCGAG