Detailed information on CNT30552029


BLAST search results

BLAST vs Swiss-Prot:
sp|P35792|PR12_HORVU, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696354Oryza glaberrimaOryza sativa32.5938.2381.58190forward
CNT30300817Oryza glaberrimaTriticum aestivum35.1621.0384.39205forward
CNT30226328Oryza glaberrimaHordeum vulgare26.5935.1583.23155forward
CNT30444949Oryza glaberrimaSaccharum spontaneum32.5922.0983.68190forward
CNT30685221Oryza glaberrimaTriticum urartu26.7617.7584.62156forward
CNT30369249Oryza glaberrimaOryza glumipatula19.0448.999.1111forward

Expression of CNT30552029

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RNRVILYRKEQEASIVVLSLFQSKLKYIIYSLI*

Sequence

>CNT30552029
CAGGAATAGAGTAATATTATATAGAAAAGAGCAAGAAGCATCGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATT
TGATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCGTGCATGTAACGAGCGAGGGACGATGCATGCGTGCTAGAC
ACATATATATAGCTTGTTGCAACAACGTCGTATGATCAGTAGGGCCTGCGGCCAACGATGTTGCCACGGGGCTCGTAGTTGCAGATGATGAAGATGCCGC
GGTTGGCGTCGCACCGCACGCGGGCGCAGCCGACGTTGGTGGAGTCGCGCCACACCACCTGCGTGTAGTGGCCGCACACCTTCCCGGCGGCGCAGCTGTT
GCTGGCGTAGTTGTAGTACTTCTTCTCGTCCAACCACGACCGCACCGCGTCCGCGGCCGTCCAGTCGGCGCCGTTCTGGGCATCGGAGCAGTGAAACATT
GTAGCGGCTACCACGGCGAGCACGAACAAGCTGCAGATTTCTAGCTTGGATGCCTCCATCTCTGCTTGTAAACGTAGCTGCTT