CANTATAdb - search

Detailed information on CNT30554884

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696202	Oryza glaberrima	Oryza sativa	87.43	70.18	99.84	626	forward
CNT30685853	Oryza glaberrima	Triticum urartu	66.06	48.51	87.95	473	forward
CNT30103268	Oryza glaberrima	Oryza rufipogon	100	62.81	99.72	716	forward
CNT30117587	Oryza glaberrima	Oryza nivara	100	69.18	99.58	716	forward

Expression of CNT30554884

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30554884
ATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAAC
ACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTG
CTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCT
CGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGG
GTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCG
TGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCC
GGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTC
GGCGGAGAGCCCCGCG