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Detailed information on CNT30694290


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373918Oryza sativaArabidopsis thaliana30.6635.6385.48248forward
CNT30380808Oryza sativaManihot esculenta22.3727.0186.19181forward
CNT30543849Oryza sativaBrassica napus29.1779.4683.9236forward
CNT30144812Oryza sativaMedicago truncatula23.9823.1281.44194forward
CNT30443360Oryza sativaAegilops tauschii35.4841.991.64287forward
CNT3079806Oryza sativaBrassica juncea12.4824.2883.17101forward
CNT30349562Oryza sativaEragrostis tef22.1344.0992.18179forward
CNT30119340Oryza sativaCitrus clementina13.7238.9585.59111forward
CNT30102190Oryza sativaOryza rufipogon29.9162.69100242forward
CNT30576794Oryza sativaOryza barthii36.7150.25100297forward

Expression of CNT30694290

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQGAFSFAFLKRSRTREAPTPTNISTNSDPDIEKNGTPASPA

>peptide 2 (60 aa)
ANMAASFRRFAKSAPLKPGVLIAMTSRETSVSNFLLLPCTLRISVLPRTSGTSTLTCATS*

>peptide 3 (34 aa)
MLARFWTYEDNKILTLRTLKDNSSSKPKASKLIA*

Sequence

>CNT30694290
CCGCTAATATGGCTGCTTCATTTAGAAGATTTGCCAAGTCTGCTCCACTAAAGCCAGGTGTTCTCATTGCTATGACTTCAAGAGAGACATCAGTATCGAA
CTTCTTGTTGCTACCGTGCACCTTAAGAATCTCTGTCCTTCCGCGTACATCAGGAACATCAACACTTACCTGTGCAACAAGTTAAAAGGTATATCCATAA
TGTTAGCAAGGTTTTGGACATATGAGGATAACAAAATTCTAACTTTGAGAACACTCAAAGATAACTCAAGCTCGAAACCAAAAGCATCCAAACTGATTGC
GTGAGTAAGCTACAACCAAGAACGAGTATTTATTGGACTTCTAGCCTAAAACCACGTGAGAACTTCAATAATACAGAACAAAGGTAAACGCTATAGCTGA
AACATTTTTACTTAATTGTGTCACAATTGAATGAGTTAAAAACTAGAATACAACAGATGTTCACATCCAAAAGAATGTTCAGTGGATAAAAACTAACCTG
TCTGTCAAAACGTCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCA
AAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTC
CTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAACTCAGATCCTGATATCGAGAAAAACGGCACACCAGCT
TCCCCTGCA