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Detailed information on CNT30443360


BLAST search results

BLAST vs Swiss-Prot:
sp|Q655S1|FTSH2_ORYSJ, E-value = 4e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694290Aegilops tauschiiOryza sativa41.935.4891.64287forward
CNT30673999Aegilops tauschiiSetaria viridis16.0633.1389.09110forward
CNT30373918Aegilops tauschiiArabidopsis thaliana35.7735.286.53245forward
CNT30380808Aegilops tauschiiManihot esculenta25.5526.1285.71175forward
CNT3091279Aegilops tauschiiSolanum tuberosum9.7827.1386.5767forward
CNT30543849Aegilops tauschiiBrassica napus34.0178.4583.69233forward
CNT30144534Aegilops tauschiiMedicago truncatula16.9332.7785.34116forward
CNT3079806Aegilops tauschiiBrassica juncea14.7424.2884.16101forward
CNT30349562Aegilops tauschiiEragrostis tef57.6697.2991.39395forward
CNT30370551Aegilops tauschiiOryza glumipatula29.4923.7491.58202forward
CNT30102190Aegilops tauschiiOryza rufipogon47.383.9491.36324forward
CNT30576794Aegilops tauschiiOryza barthii86.1399.8391.19590forward

Expression of CNT30443360

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MARQPLLRSPWQAKSYQFQEDQQAAHPWECGHQRR*

>peptide 2 (80 aa)
MTVPSIPATILSIESSISFEEIPVLPRRPANMAASFRRFARSAPLNPGLSKAESKMSALLVAATTMMPVFPSKPSISVSS*

>peptide 3 (97 aa)
MQGAFSLAFLKRSRTREAPTPTNISTNSEPDIEKNGTPASPAIALASKVLPVPGGPTSSTPLGMRAPTAVNLSGFFRNSTTSMKSCFASSTPATSSNV

>peptide 4 (32 aa)
TNCMPNFVVSNKAFALPICHDSSFHTSHYSVD*

Sequence

>CNT30443360
CACAAACTGCATGCCCAACTTCGTGGTAAGCAACAAGGCTTTTGCTCTTCCCATCTGTCATGACAGTTCCTTCCATACCAGCCACTATTCTGTCGATTGA
ATCATCAATCTCCTTCGAGGAAATTCCGGTCCTCCCACGTCGGCCTGCTAATATGGCTGCCTCATTCAGAAGATTCGCCAGGTCTGCTCCACTGAACCCA
GGTCTAAGTAAAGCGGAATCCAAAATGTCAGCCCTGTTGGTGGCAGCAACAACAATGATGCCAGTGTTTCCCTCAAAACCATCCATCTCAGTCAGTAGCT
GATTGAGAGTCTGCTCCCTTTCATCGTTCCCACCACCGATACCTGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGC
ATTCTCCTTGGCCTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAACTCAGAACCCGATATCGAGAAGAATGGCACG
CCAGCCTCTCCTGCGATCGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGCACACCCTTGGGAATGCGGGCACCAACGGCGGTGA
ACCTCTCTGGCTTCTTCAGGAACTCAACCACTTCCATGAAGTCCTGCTTTGCTTCGTCAACACCAGCAACATCATCGAACGTAAC