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Detailed information on CNT3079806


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39102|FTSH1_ARATH, E-value = 5e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694290Brassica junceaOryza sativa24.2812.4883.17101forward
CNT30673684Brassica junceaSetaria viridis24.5223.1385.29102forward
CNT30727216Brassica junceaCorchorus capsularis37.0223.3786.36154forward
CNT30543849Brassica junceaBrassica napus2535.0282.69104forward
CNT30172715Brassica junceaTrifolium pratense47.8427.0484.42199forward
CNT30144812Brassica junceaMedicago truncatula37.518.5987.18156forward
CNT30443360Brassica junceaAegilops tauschii24.2814.7484.16101forward
CNT30653851Brassica junceaRosa chinensis32.9315.7387.59137forward
CNT30689755Brassica junceaTriticum urartu36.7850.8384.97153forward
CNT30349562Brassica junceaEragrostis tef24.2824.8882.18101forward
CNT30479936Brassica junceaArabidopsis halleri40.1414.9192.22167forward
CNT30368332Brassica junceaSorghum bicolor26.448.0283.64110forward
CNT30102190Brassica junceaOryza rufipogon24.2826.1783.17101forward
CNT30576794Brassica junceaOryza barthii24.2817.0983.17101forward
CNT30175903Brassica junceaVigna angularis30.7728.3287.5128forward

Expression of CNT3079806

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KSLLLIRDNSILLLRSSNDPLKSIRDLILAYLLKLTPGRKNRRFVHQVLQVSTSETRSPPSNLIKVHIFTNRLPS*

>peptide 2 (61 aa)
MNLKNLDSASNIRSIRSRQNNHTRVTREPIHLSQQLINRLLPLIIPSSHPSSSLPPHSINLI

>peptide 3 (76 aa)
SLFFSSETTAFFFSGPAMILSRASEISSLLISLSSRLAARIAASFIRFCKSAPVKPGVLLATLSKSTSLPIAFPLE*

Sequence

>CNT3079806
CAAGTCTCTTCTTCTCATCAGAGACAACAGCATTCTTCTTCTCAGGTCCAGCAATGATCCTCTCAAGAGCATCAGAGATCTCATCCTTGCTTATCTCCTT
AAGCTCACGCCTGGCCGCAAGAATCGCCGCTTCGTTCATCAGGTTCTGCAAGTCAGCACCAGTGAAACCCGGAGTCCTCCTAGCAACCTTATCAAAGTCC
ACATCTTTACCAATCGCCTTCCCTCTTGAATGAACCTGAAGAATCTTGACTCTGCCAGCAACATCAGGTCTATTCGTAGCCGCCAAAACAATCACACCAG
AGTTACCAGAGAACCCATCCATCTCAGTCAACAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCTCCTCCCATCCCAGCTCCTCTCTGCCTCCCCAC
AGCATCAATCTCATCG