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Detailed information on CNT30576794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q655S1|FTSH2_ORYSJ, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694290Oryza barthiiOryza sativa50.2536.71100297forward
CNT30373918Oryza barthiiArabidopsis thaliana43.4936.9385.21257forward
CNT30380808Oryza barthiiManihot esculenta36.2131.9485.05214forward
CNT30504438Oryza barthiiNicotiana attenuata20.9814.3483.87124forward
CNT3091279Oryza barthiiSolanum tuberosum18.9545.3483.04112forward
CNT30543849Oryza barthiiBrassica napus39.9379.4683.9236forward
CNT30144812Oryza barthiiMedicago truncatula32.8323.1281.44194forward
CNT30443360Oryza barthiiAegilops tauschii99.8386.1391.19590forward
CNT3079806Oryza barthiiBrassica juncea17.0924.2883.17101forward
CNT30653851Oryza barthiiRosa chinensis24.216.4283.22143forward
CNT30349562Oryza barthiiEragrostis tef66.8497.2991.9395forward
CNT30479936Oryza barthiiArabidopsis halleri20.6410.8982.79122forward
CNT30370551Oryza barthiiOryza glumipatula34.3523.85100203forward
CNT30102190Oryza barthiiOryza rufipogon53.6482.12100317forward

Expression of CNT30576794

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MQGAFSFAFLKRSRTREAPTPTNISTNSDPDIEKNGTPASPAIALASKVLPVPGGPTSRTPLGMRAP

>peptide 2 (32 aa)
TNCMPNFMVSNKTFALPICHHSSFHTSHYSVN*

>peptide 3 (64 aa)
HKLHAQLHGKQQDFCSSHLSSQFLPYQPLFCQLNHQSPLRKLLSDHVGPLIWLLHLEDLPSLLH*

>peptide 4 (49 aa)
MAASFRRFAKSAPLKPGLSKAESRISALLVAAITMIPVFPSKPSISVSN*

Sequence

>CNT30576794
CCACAAATTGCATGCCCAACTTCATGGTAAGCAACAAGACTTTTGCTCTTCCCATCTGTCATCACAGTTCCTTCCATACCAGCCACTATTCTGTCAATTG
AATCATCAATCTCCTTTGAGGAAATTGCTGTCCGACCACGTCGGCCCGCTAATATGGCTGCTTCATTTAGAAGATTTGCCAAGTCTGCTCCACTAAAGCC
AGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAAC
TGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGAG
CATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAACTCAGATCCTGATATCGAGAAAAACGGCAC
ACCAGCTTCCCCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCTTAGGGATGCGAGCACCA