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Detailed information on CNT30144812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BAE0|FTSH_MEDSA, E-value = 2e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694290Medicago truncatulaOryza sativa23.1223.9881.44194forward
CNT30673684Medicago truncatulaSetaria viridis13.8326.384.48116forward
CNT30631252Medicago truncatulaVigna unguiculata11.3235.1988.4295forward
CNT30504438Medicago truncatulaNicotiana attenuata20.0219.4281.55168forward
CNT30708769Medicago truncatulaGlycine max16.5746.1882.01139forward
CNT30563498Medicago truncatulaActinidia chinensis33.4999.2983.27281forward
CNT3085131Medicago truncatulaVigna radiata13.4739.6586.73113forward
CNT30540034Medicago truncatulaBrassica napus8.8231.0986.4974forward
CNT3079806Medicago truncatulaBrassica juncea18.5937.587.18156forward
CNT30653851Medicago truncatulaRosa chinensis34.9233.6485.32293forward
CNT30715657Medicago truncatulaMalus domestica golden20.6264.0780.35173forward
CNT30349562Medicago truncatulaEragrostis tef13.8328.5787.07116forward
CNT30479936Medicago truncatulaArabidopsis halleri58.5243.8485.95491forward
CNT30355239Medicago truncatulaLactuca sativa16.8121.0180.85141forward
CNT30573917Medicago truncatulaVitis vinifera28.4930.6878.66239forward
CNT30102190Medicago truncatulaOryza rufipogon23.1250.2681.44194forward
CNT30576794Medicago truncatulaOryza barthii23.1232.8381.44194forward
CNT30175903Medicago truncatulaVigna angularis13.9525.8888.89117forward

Expression of CNT30144812

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LRIVAQMQFKTMLLTTKQDTLGSLFTSKNSS*

>peptide 2 (30 aa)
MKRTVYQLHRPLPSPTMSFQFQVAPLKDIL*

>peptide 3 (88 aa)
MHGAFDFAFSNKSLTLEAPTPTNSSTNSEAAHEKNGVPASPATALANNVFPVPGGPTKRHPLGILAPKAVYLSGFFKKSTTSCSSNFA*

Sequence

>CNT30144812
TTTAAGAATTGTGGCACAAATGCAATTTAAAACCATGTTGTTGACAACAAAACAAGACACACTAGGATCATTATTTACTTCAAAAAATTCCTCATAAATT
AAACTGACTGTGAGATAGTTAAAAGTTTCGGACTCATTCACCTGAAGGATTTTAACTCTACCGGCAACATCAGGTCTATCAACAGTAACTTGTCTATCAA
ACCTTCCAGGTCTAAGCAATGCAGAATCAAGAACATCAGGTCTATTAGTAGCAGCCAAGACAATAACGCCCGAATTACCAGAAAATCCATCCATCTCAGT
CAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACCACCAAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCAATAAACACAATG
CACGGTGCCTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACTCCCACAAACAGTTCCACAAACTCCGAAGCCGCACATGAAAAGA
ACGGTGTACCAGCTTCACCGGCCACTGCCCTCGCCAACAATGTCTTTCCAGTTCCAGGTGGCCCCACTAAAAGACATCCTTTAGGAATCTTAGCGCCTAA
AGCAGTGTACTTATCAGGATTCTTCAAGAAATCAACAACTTCTTGTAGTTCCAATTTCGCTTGATCAGCACCGGCCACATCAGCAAAAGTTACTCCAGTC
TCTGGTACTTCCTGGAATTTAGATTTCGATCTACCAAAATCCATAGGCCCACCAAGCCCACCAGGCCCACCGGGTCCTCCTTGACCTCTACGGAAAATCA
AAAACAAACCCGCAAATGCAAGGAACGATCAACACTCAG